Variant report

Variant	rs62085557
Chromosome Location	chr18:8965711-8965712
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12965683	0.95[EUR][1000 genomes]
rs34156538	0.93[EUR][1000 genomes]
rs34226661	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35115628	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35357642	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35400380	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35932806	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62085549	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62085550	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62085555	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62087061	0.93[EUR][1000 genomes]
rs67018411	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67049201	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7235055	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7236549	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8959400-8969000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:8960200-8970200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr18:8961800-8982400	Weak transcription	NHDF-Ad	bronchial
4	chr18:8963200-8970200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr18:8963400-8970200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr18:8963600-8966200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr18:8963600-8966400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr18:8963800-8970000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr18:8963800-8982200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr18:8964400-8970000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr18:8965400-8966200	Enhancers	Fetal Heart	heart
12	chr18:8965400-8966600	Enhancers	Fetal Brain Male	brain
13	chr18:8965400-8967200	Enhancers	K562	blood
14	chr18:8965600-8970600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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