Variant report

Variant	rs67049201
Chromosome Location	chr18:8963817-8963818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12965683	0.97[EUR][1000 genomes]
rs34156538	0.95[EUR][1000 genomes]
rs34226661	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35115628	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35357642	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35400380	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35932806	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62085549	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62085550	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62085555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62085557	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62087061	0.90[EUR][1000 genomes]
rs67018411	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7235055	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7236549	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3372463	chr18:8961352-8965650	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8959400-8969000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:8960200-8964400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr18:8960200-8970200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr18:8961800-8982400	Weak transcription	NHDF-Ad	bronchial
5	chr18:8963000-8965400	Weak transcription	Fetal Brain Male	brain
6	chr18:8963000-8965400	Weak transcription	Fetal Heart	heart
7	chr18:8963200-8970200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr18:8963400-8965200	Weak transcription	HepG2	liver
9	chr18:8963400-8970200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr18:8963600-8965400	Weak transcription	K562	blood
11	chr18:8963600-8966200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr18:8963600-8966400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr18:8963800-8965200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr18:8963800-8970000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr18:8963800-8982200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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