Variant report

Variant	rs62096890
Chromosome Location	chr18:13373793-13373794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:13373046..13375537-chr18:13392405..13395304,3	MCF-7	breast:
2	chr18:13214539..13218165-chr18:13373231..13377099,4	MCF-7	breast:
3	chr18:13370761..13372508-chr18:13373066..13375363,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168675	Chromatin interaction
ENSG00000267239	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1893980	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13351800-13374800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr18:13355000-13374200	Weak transcription	Dnd41	blood
3	chr18:13356400-13379200	Weak transcription	Aorta	Aorta
4	chr18:13359400-13379400	Weak transcription	Psoas Muscle	Psoas
5	chr18:13362000-13374600	Weak transcription	Fetal Muscle Leg	muscle
6	chr18:13365800-13376400	Weak transcription	Liver	Liver
7	chr18:13366800-13374200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr18:13367200-13374600	Weak transcription	Brain Hippocampus Middle	brain
9	chr18:13367800-13374800	Weak transcription	Right Atrium	heart
10	chr18:13369200-13374600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr18:13369600-13374600	Weak transcription	Gastric	stomach
12	chr18:13370000-13374600	Weak transcription	Esophagus	oesophagus
13	chr18:13370000-13375000	Weak transcription	Fetal Heart	heart
14	chr18:13370000-13382200	Enhancers	Fetal Brain Male	brain
15	chr18:13370400-13374600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr18:13370400-13374800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr18:13370400-13374800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr18:13370400-13374800	Weak transcription	A549	lung
19	chr18:13370400-13375000	Weak transcription	Fetal Stomach	stomach
20	chr18:13370600-13374200	Weak transcription	Right Ventricle	heart
21	chr18:13370600-13374600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr18:13370600-13374600	Weak transcription	Colon Smooth Muscle	Colon
23	chr18:13370600-13374600	Weak transcription	NH-A	brain
24	chr18:13370600-13375000	Weak transcription	Stomach Mucosa	stomach
25	chr18:13371200-13375200	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr18:13371200-13376200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr18:13371400-13375800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr18:13371800-13373800	Enhancers	Primary T cells from cord blood	blood
29	chr18:13372200-13376800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr18:13372400-13375000	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr18:13372400-13375600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr18:13372400-13377000	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr18:13372400-13377000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr18:13372600-13374000	Weak transcription	Brain Substantia Nigra	brain
35	chr18:13372600-13374200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr18:13372600-13374200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr18:13372600-13374600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr18:13372600-13376400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr18:13372600-13379600	Weak transcription	Colonic Mucosa	Colon
40	chr18:13372800-13374200	Weak transcription	Brain Anterior Caudate	brain
41	chr18:13372800-13374200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr18:13372800-13374600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr18:13372800-13374600	Weak transcription	Spleen	Spleen
44	chr18:13372800-13374800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr18:13372800-13374800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr18:13372800-13374800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr18:13372800-13374800	Weak transcription	HSMMtube	muscle
48	chr18:13372800-13375000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr18:13372800-13375000	Weak transcription	Small Intestine	intestine
50	chr18:13372800-13377200	Weak transcription	Rectal Mucosa Donor 29	rectum

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