The 2.0 version of rSNPBase

Variant report

Variant rs62109414
Chromosome Location chr2:20154040-20154041
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:20102800-20173200 Weak transcription Fetal Brain Male brain
2 chr2:20117600-20188400 Weak transcription Brain Angular Gyrus brain
3 chr2:20127400-20167800 Weak transcription Placenta Amnion Placenta Amnion
4 chr2:20128400-20188400 Weak transcription Colon Smooth Muscle Colon
5 chr2:20128400-20189200 Weak transcription Small Intestine intestine
6 chr2:20129400-20184800 Weak transcription Esophagus oesophagus
7 chr2:20129600-20189000 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr2:20130200-20189000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr2:20130400-20164600 Weak transcription Lung lung
10 chr2:20130400-20188800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr2:20130600-20161200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr2:20130600-20188800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr2:20131800-20189000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr2:20133600-20164800 Weak transcription Gastric stomach
15 chr2:20133600-20184800 Weak transcription Psoas Muscle Psoas
16 chr2:20133800-20173200 Weak transcription NHEK skin
17 chr2:20133800-20176800 Weak transcription HMEC breast
18 chr2:20134200-20168600 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr2:20136400-20177000 Weak transcription GM12878-XiMat blood
20 chr2:20136400-20177200 Weak transcription Rectal Smooth Muscle rectum
21 chr2:20136600-20171200 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr2:20136600-20177200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr2:20136800-20171400 Weak transcription Primary T helper naive cells fromperipheralblood blood
24 chr2:20136800-20188800 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr2:20136800-20189000 Weak transcription Primary T regulatory cells fromperipheralblood blood
26 chr2:20137600-20161000 Weak transcription HSMMtube muscle
27 chr2:20137600-20165200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr2:20137800-20161200 Weak transcription Brain Inferior Temporal Lobe brain
29 chr2:20137800-20165000 Weak transcription H1 Cell Line embryonic stem cell
30 chr2:20138000-20165000 Weak transcription Fetal Brain Female brain
31 chr2:20138000-20177000 Weak transcription Skeletal Muscle Female skeletal muscle
32 chr2:20138200-20164200 Weak transcription Fetal Adrenal Gland Adrenal Gland
33 chr2:20138200-20165000 Weak transcription Brain Cingulate Gyrus brain
34 chr2:20138200-20165000 Weak transcription Fetal Muscle Leg muscle
35 chr2:20138200-20171400 Weak transcription Primary T helper cells PMA-I stimulated --
36 chr2:20138200-20188800 Weak transcription Rectal Mucosa Donor 29 rectum
37 chr2:20138400-20164400 Weak transcription Stomach Smooth Muscle stomach
38 chr2:20138400-20167800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
39 chr2:20138600-20165000 Weak transcription Fetal Muscle Trunk muscle
40 chr2:20138600-20165000 Weak transcription Left Ventricle heart
41 chr2:20138600-20165400 Weak transcription Osteobl bone
42 chr2:20138600-20184800 Weak transcription Aorta Aorta
43 chr2:20138800-20164800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
44 chr2:20138800-20165000 Weak transcription Primary T cells fromperipheralblood blood
45 chr2:20138800-20165000 Weak transcription Fetal Thymus thymus
46 chr2:20141600-20163800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
47 chr2:20144600-20173200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr2:20144600-20173400 Weak transcription H9 Cell Line embryonic stem cell
49 chr2:20144600-20173600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
50 chr2:20144800-20154600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015