Variant report

Variant	rs62111490
Chromosome Location	chr19:38051763-38051764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10153500	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10424047	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11083424	0.82[AMR][1000 genomes]
rs11878261	0.81[EUR][1000 genomes]
rs11879149	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11880056	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11880604	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11883255	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34206817	1.00[EUR][1000 genomes]
rs34743484	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs45505797	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56075341	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56264690	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56281742	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57504517	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57725815	0.93[EUR][1000 genomes]
rs57867853	1.00[EUR][1000 genomes]
rs59966837	1.00[EUR][1000 genomes]
rs60686304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62108260	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62108262	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62108289	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62108290	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62108292	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62108293	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62108297	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62108348	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62108354	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62110178	1.00[EUR][1000 genomes]
rs62110183	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62110185	0.93[EUR][1000 genomes]
rs62110186	0.93[EUR][1000 genomes]
rs62110187	0.84[EUR][1000 genomes]
rs62110188	0.81[EUR][1000 genomes]
rs62111488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7245981	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7247175	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7258992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7259029	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7259321	0.82[AMR][1000 genomes]
rs7259717	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73930999	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73932929	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932955	0.90[EUR][1000 genomes]
rs8101991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8102189	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8104124	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8104747	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8108261	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38032400-38080800	ZNF genes & repeats	Liver	Liver
2	chr19:38032600-38075200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:38038000-38078400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:38038600-38079600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:38041200-38079600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:38041800-38059600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr19:38042800-38053800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr19:38045000-38078600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr19:38046400-38067200	ZNF genes & repeats	Brain Substantia Nigra	brain
10	chr19:38046400-38071800	ZNF genes & repeats	Brain Hippocampus Middle	brain
11	chr19:38046600-38053800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr19:38046600-38066800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
13	chr19:38046600-38079600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
14	chr19:38047000-38058600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
15	chr19:38047400-38054800	ZNF genes & repeats	Brain Angular Gyrus	brain
16	chr19:38047400-38067000	ZNF genes & repeats	Brain Anterior Caudate	brain
17	chr19:38047400-38078600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
18	chr19:38049200-38079600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
19	chr19:38050000-38057400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr19:38050200-38055400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr19:38050800-38052200	ZNF genes & repeats	Fetal Stomach	stomach
22	chr19:38051200-38054200	ZNF genes & repeats	Ovary	ovary
23	chr19:38051200-38054200	ZNF genes & repeats	Small Intestine	intestine
24	chr19:38051400-38052200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr19:38051400-38052200	ZNF genes & repeats	Aorta	Aorta
26	chr19:38051400-38058800	ZNF genes & repeats	Fetal Lung	lung
27	chr19:38051400-38059600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr19:38051400-38059800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
29	chr19:38051400-38066800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
30	chr19:38051600-38053800	ZNF genes & repeats	Fetal Kidney	kidney
31	chr19:38051600-38058200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
32	chr19:38051600-38061600	ZNF genes & repeats	Colon Smooth Muscle	Colon
33	chr19:38051600-38077600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
34	chr19:38051600-38078800	ZNF genes & repeats	Fetal Brain Female	brain

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