Variant report

Variant	rs73932955
Chromosome Location	chr19:38235295-38235296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10153500	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10424047	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11878261	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11879149	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11880056	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11880604	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11883255	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34206817	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56075341	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56264690	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56281742	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57504517	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57725815	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57867853	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59966837	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60686304	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62108260	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62108262	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62108289	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62108290	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62108292	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62108293	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62108297	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62108344	0.83[AFR][1000 genomes]
rs62108348	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62108350	0.90[ASN][1000 genomes]
rs62108354	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62110178	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62110183	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62110185	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62110186	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62110187	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs62110188	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62111488	0.90[EUR][1000 genomes]
rs62111490	0.90[EUR][1000 genomes]
rs7245981	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7246147	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7247175	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7247345	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7258992	0.90[EUR][1000 genomes]
rs7259029	0.90[EUR][1000 genomes]
rs7259717	0.90[EUR][1000 genomes]
rs73932929	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8101476	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8101991	0.90[EUR][1000 genomes]
rs8102189	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8104124	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8104747	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8108261	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv833820	chr19:38190721-38414049	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38221200-38241800	ZNF genes & repeats	Liver	Liver
2	chr19:38224600-38241600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:38225200-38237200	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr19:38229000-38238000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
5	chr19:38230800-38251400	Weak transcription	Pancreas	Pancrea
6	chr19:38230800-38252600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr19:38230800-38259800	Weak transcription	Fetal Thymus	thymus
8	chr19:38231000-38237200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr19:38231000-38237800	Weak transcription	Brain Angular Gyrus	brain
10	chr19:38231000-38246600	Weak transcription	Left Ventricle	heart
11	chr19:38231000-38246800	Weak transcription	Brain Germinal Matrix	brain
12	chr19:38231000-38250400	Weak transcription	Brain Substantia Nigra	brain
13	chr19:38231000-38258200	Weak transcription	Brain Anterior Caudate	brain
14	chr19:38231000-38258400	Weak transcription	Fetal Kidney	kidney
15	chr19:38231000-38258800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr19:38231000-38260400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr19:38231400-38250600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr19:38231400-38255800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr19:38231400-38259400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr19:38231400-38259800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr19:38231600-38238200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr19:38231800-38245800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr19:38231800-38253200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr19:38231800-38257600	Weak transcription	HSMM	muscle
25	chr19:38231800-38258200	Weak transcription	HSMMtube	muscle
26	chr19:38231800-38269200	Weak transcription	Fetal Brain Male	brain
27	chr19:38232000-38236600	Weak transcription	Fetal Brain Female	brain
28	chr19:38232200-38250600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr19:38232200-38253000	Weak transcription	Colon Smooth Muscle	Colon
30	chr19:38232400-38236000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr19:38232400-38236800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr19:38232400-38237200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr19:38232400-38237800	Weak transcription	Small Intestine	intestine
34	chr19:38232400-38238200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr19:38232400-38242800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr19:38232400-38243200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr19:38232400-38252000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr19:38232400-38253600	Weak transcription	Right Ventricle	heart
39	chr19:38232400-38254000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr19:38232400-38255600	Weak transcription	Psoas Muscle	Psoas
41	chr19:38232400-38256600	Weak transcription	Dnd41	blood
42	chr19:38233400-38237000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr19:38233800-38237800	Weak transcription	Fetal Lung	lung
44	chr19:38233800-38239200	Weak transcription	Stomach Mucosa	stomach
45	chr19:38234000-38235600	Strong transcription	Fetal Stomach	stomach
46	chr19:38234800-38235400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
47	chr19:38234800-38235400	ZNF genes & repeats	Primary B cells from cord blood	blood
48	chr19:38234800-38235400	ZNF genes & repeats	Primary T cells from cord blood	blood
49	chr19:38234800-38235400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
50	chr19:38234800-38235400	Strong transcription	Skeletal Muscle Female	skeletal muscle

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