Variant report

Variant	rs62112194
Chromosome Location	chr19:36302612-36302613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10407992	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17777002	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2071328	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2071329	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41426049	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59659120	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61384076	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62112197	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62112198	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62112199	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7248909	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7256608	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73928315	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911637	chr19:36261928-36309321	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	esv3446624	chr19:36282645-36318788	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36283400-36303000	Weak transcription	Pancreas	Pancrea
2	chr19:36299400-36302800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:36302400-36303600	Flanking Active TSS	Liver	Liver
4	chr19:36302600-36302800	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
5	chr19:36302600-36302800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr19:36302600-36302800	Enhancers	K562	blood
7	chr19:36302600-36303600	Enhancers	A549	lung
8	chr19:36302600-36303800	Bivalent/Poised TSS	HepG2	liver
9	chr19:36302600-36304400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr19:36302600-36304400	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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