Variant report

Variant	rs73928315
Chromosome Location	chr19:36311013-36311014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36184372..36185301-chr19:36310613..36311702,6	K562	blood:
2	chr19:36207093..36207844-chr19:36310862..36311467,2	MCF-7	breast:
3	chr19:36207753..36208395-chr19:36310728..36311348,2	MCF-7	breast:
4	chr19:36184431..36185252-chr19:36310666..36311379,3	MCF-7	breast:
5	chr19:36039616..36040774-chr19:36310651..36311548,4	K562	blood:
6	chr19:36207922..36208687-chr19:36310659..36311315,2	MCF-7	breast:
7	chr19:36310142..36312511-chr19:36338610..36340461,2	K562	blood:
8	chr19:36207031..36209007-chr19:36310284..36312197,2	MCF-7	breast:
9	chr19:36184588..36185432-chr19:36310650..36311616,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NPHS1-1	chr19:36309325-36311606	ucscGeneNc_uc002nsx_1

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10407992	0.90[ASN][1000 genomes]
rs17777002	0.93[ASN][1000 genomes]
rs2071328	0.93[ASN][1000 genomes]
rs2071329	0.93[ASN][1000 genomes]
rs41426049	0.91[ASN][1000 genomes]
rs59659120	0.91[ASN][1000 genomes]
rs61384076	0.93[ASN][1000 genomes]
rs62112194	0.89[ASN][1000 genomes]
rs62112197	0.90[ASN][1000 genomes]
rs62112198	0.90[ASN][1000 genomes]
rs62112199	0.90[ASN][1000 genomes]
rs7248909	0.93[ASN][1000 genomes]
rs7256608	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv3446624	chr19:36282645-36318788	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
5	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
6	esv2394825	chr19:36311013-36311015	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36303400-36319600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:36310000-36311200	Bivalent Enhancer	A549	lung
3	chr19:36310400-36311200	Enhancers	Liver	Liver
4	chr19:36310600-36311200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr19:36310600-36311200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr19:36310600-36311200	Bivalent Enhancer	Fetal Brain Male	brain
7	chr19:36311000-36313400	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links