Variant report

Variant	rs62112272
Chromosome Location	chr19:38385695-38385696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38383517..38385021-chr19:38385381..38387028,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs16975881	0.93[AMR][1000 genomes]
rs16975884	0.93[AMR][1000 genomes]
rs16975930	0.93[AMR][1000 genomes]
rs62110188	0.80[AMR][1000 genomes]
rs62110190	0.89[AMR][1000 genomes]
rs62110192	0.93[AMR][1000 genomes]
rs62110193	0.85[AMR][1000 genomes]
rs62110194	0.85[AMR][1000 genomes]
rs62110195	0.93[AMR][1000 genomes]
rs62110217	0.86[AMR][1000 genomes]
rs62110222	0.93[AMR][1000 genomes]
rs62110229	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62110230	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62110232	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62112273	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62112274	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62112275	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62112277	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62112279	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62112280	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62112282	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62112285	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62112286	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62112287	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62112288	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62112289	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62112290	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62112291	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62120128	0.93[EUR][1000 genomes]
rs62120129	0.93[EUR][1000 genomes]
rs62120130	0.90[EUR][1000 genomes]
rs62120131	0.86[EUR][1000 genomes]
rs7245965	0.93[AMR][1000 genomes]
rs7246147	0.80[AMR][1000 genomes]
rs7247345	0.80[AMR][1000 genomes]
rs7251502	0.93[AMR][1000 genomes]
rs7257838	0.93[EUR][1000 genomes]
rs7258680	0.93[EUR][1000 genomes]
rs8100469	0.93[AMR][1000 genomes]
rs8105754	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv833820	chr19:38190721-38414049	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38383800-38387000	Weak transcription	Right Atrium	heart
2	chr19:38384000-38387600	Enhancers	Fetal Muscle Leg	muscle
3	chr19:38384600-38386000	Enhancers	Fetal Muscle Trunk	muscle

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