Variant report

Variant	rs62112274
Chromosome Location	chr19:38395331-38395332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:38387761..38390868-chr19:38391934..38396797,4	MCF-7	breast:
2	chr19:38393305..38395506-chr19:38395549..38397777,2	MCF-7	breast:
3	chr19:38395169..38397247-chr19:38624006..38625542,2	MCF-7	breast:
4	chr19:38393305..38395616-chr19:38395759..38398927,3	MCF-7	breast:
5	chr19:38393450..38400778-chr19:38419865..38427350,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105738	Chromatin interaction
ENSG00000171804	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs62110230	0.80[EUR][1000 genomes]
rs62110232	0.80[EUR][1000 genomes]
rs62112272	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62112273	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62112275	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62112277	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62112279	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62112280	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62112282	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62112285	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62112286	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62112287	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62112288	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62112289	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62112290	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62112291	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62120128	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62120129	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62120130	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62120131	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7257838	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7258680	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8105754	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv833820	chr19:38190721-38414049	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1064401	chr19:38387797-38427984	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38389600-38396600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr19:38392400-38396600	Weak transcription	Placenta	Placenta
3	chr19:38392600-38396600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr19:38394000-38396200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr19:38394000-38396400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr19:38394000-38396400	Weak transcription	Fetal Intestine Large	intestine
7	chr19:38394000-38396400	Weak transcription	Fetal Intestine Small	intestine
8	chr19:38394000-38396400	Weak transcription	A549	lung
9	chr19:38394600-38396400	Weak transcription	H9 Cell Line	embryonic stem cell

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