Variant report
| Variant | rs62113775 |
|---|---|
| Chromosome Location | chr2:12167822-12167823 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10495586 | 0.89[ASN][1000 genomes] |
| rs10495587 | 1.00[ASN][1000 genomes] |
| rs12467999 | 1.00[ASN][1000 genomes] |
| rs12472261 | 1.00[ASN][1000 genomes] |
| rs12476424 | 1.00[ASN][1000 genomes] |
| rs12478104 | 1.00[ASN][1000 genomes] |
| rs12478956 | 0.89[ASN][1000 genomes] |
| rs12479075 | 0.89[ASN][1000 genomes] |
| rs13012119 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13025618 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs13026386 | 1.00[ASN][1000 genomes] |
| rs13027180 | 1.00[ASN][1000 genomes] |
| rs13029543 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs16858133 | 0.84[EUR][1000 genomes] |
| rs2119144 | 1.00[ASN][1000 genomes] |
| rs34424904 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs34587335 | 1.00[ASN][1000 genomes] |
| rs34774368 | 0.84[EUR][1000 genomes] |
| rs35573038 | 1.00[ASN][1000 genomes] |
| rs35763905 | 0.90[ASN][1000 genomes] |
| rs35875804 | 0.89[ASN][1000 genomes] |
| rs35921314 | 0.91[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35951700 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs35971524 | 0.89[ASN][1000 genomes] |
| rs4129333 | 1.00[ASN][1000 genomes] |
| rs55752546 | 1.00[ASN][1000 genomes] |
| rs55804172 | 1.00[ASN][1000 genomes] |
| rs56057816 | 1.00[ASN][1000 genomes] |
| rs56159518 | 1.00[ASN][1000 genomes] |
| rs56278051 | 1.00[ASN][1000 genomes] |
| rs62113776 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62116484 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs71446446 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs727458 | 1.00[ASN][1000 genomes] |
| rs7584364 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003899 | chr2:11789374-12248081 | Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv999704 | chr2:12153766-12243960 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1005069 | chr2:12161023-12242734 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1000696 | chr2:12162843-12241022 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:12167600-12171800 | Weak transcription | K562 | blood |
| 2 | chr2:12167600-12172400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
