Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10495587	0.90[ASN][1000 genomes]
rs12467999	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12472165	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12472261	0.90[ASN][1000 genomes]
rs12476424	0.90[ASN][1000 genomes]
rs12478104	0.90[ASN][1000 genomes]
rs12478633	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12478664	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12478705	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13012119	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13026386	0.90[ASN][1000 genomes]
rs13027180	0.90[ASN][1000 genomes]
rs2119144	0.90[ASN][1000 genomes]
rs34587335	0.90[ASN][1000 genomes]
rs35573038	0.90[ASN][1000 genomes]
rs35763905	0.81[ASN][1000 genomes]
rs35921314	0.90[ASN][1000 genomes]
rs4129333	0.90[ASN][1000 genomes]
rs41378155	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55752546	0.90[ASN][1000 genomes]
rs55804172	0.90[ASN][1000 genomes]
rs56057816	0.90[ASN][1000 genomes]
rs56159518	0.90[ASN][1000 genomes]
rs56278051	0.90[ASN][1000 genomes]
rs62113775	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62113776	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs727458	0.90[ASN][1000 genomes]
rs7584364	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv999704	chr2:12153766-12243960	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1005069	chr2:12161023-12242734	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12155000-12164000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:12157800-12163000	ZNF genes & repeats	GM12878-XiMat	blood
3	chr2:12160400-12161600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr2:12160400-12161600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:12160600-12161800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
6	chr2:12160800-12161600	ZNF genes & repeats	Fetal Lung	lung
7	chr2:12160800-12162600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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