Variant report

Variant	rs62119536
Chromosome Location	chr2:15509928-15509929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:15508607..15510218-chr2:15520253..15522583,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62119462	1.00[AFR][1000 genomes]
rs62119500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62119718	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515567	chr2:15004748-15906778	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv529077	chr2:15143950-15722947	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv948649	chr2:15273933-15572834	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1010896	chr2:15467099-15535863	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1003654	chr2:15487692-15592019	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:15426800-15520000	Weak transcription	Colonic Mucosa	Colon
2	chr2:15442800-15513600	Weak transcription	HSMMtube	muscle
3	chr2:15457200-15532600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr2:15465000-15550600	Weak transcription	Right Ventricle	heart
5	chr2:15470400-15513400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr2:15470800-15513600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:15471000-15563800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr2:15471000-15565800	Weak transcription	Small Intestine	intestine
9	chr2:15475200-15517600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:15483400-15523000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:15485800-15537400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr2:15487400-15523800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:15487400-15529200	Weak transcription	Fetal Brain Female	brain
14	chr2:15489200-15521800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr2:15489200-15600400	Weak transcription	Brain Angular Gyrus	brain
16	chr2:15491400-15510000	Weak transcription	Brain Germinal Matrix	brain
17	chr2:15493000-15523600	Weak transcription	Spleen	Spleen
18	chr2:15493000-15578600	Weak transcription	Gastric	stomach
19	chr2:15493200-15513800	Weak transcription	Fetal Kidney	kidney
20	chr2:15493200-15550600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr2:15493200-15551000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr2:15493400-15511800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:15493800-15510000	Weak transcription	Pancreas	Pancrea
24	chr2:15493800-15513400	Weak transcription	Brain Anterior Caudate	brain
25	chr2:15493800-15530000	Weak transcription	Aorta	Aorta
26	chr2:15494000-15514600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr2:15495800-15514600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr2:15496000-15519400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr2:15496000-15522600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr2:15496600-15510400	Weak transcription	Thymus	Thymus
31	chr2:15496600-15522400	Weak transcription	Brain Substantia Nigra	brain
32	chr2:15496600-15522600	Weak transcription	Esophagus	oesophagus
33	chr2:15496600-15555800	Weak transcription	Fetal Thymus	thymus
34	chr2:15497200-15518800	Weak transcription	Psoas Muscle	Psoas
35	chr2:15497800-15510200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr2:15498200-15513400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr2:15498400-15529200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:15498800-15510600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr2:15499000-15510000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr2:15499000-15510000	Weak transcription	Fetal Lung	lung
41	chr2:15499000-15510400	Weak transcription	Lung	lung
42	chr2:15500800-15520800	Weak transcription	Stomach Mucosa	stomach
43	chr2:15501000-15511200	Weak transcription	HSMM	muscle
44	chr2:15501000-15527800	Weak transcription	NHLF	lung
45	chr2:15501200-15512800	Weak transcription	A549	lung
46	chr2:15501200-15519200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr2:15501400-15513600	Weak transcription	HUVEC	blood vessel
48	chr2:15503200-15510400	Weak transcription	Fetal Stomach	stomach
49	chr2:15503400-15510400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr2:15503400-15513800	Weak transcription	Placenta	Placenta

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