Variant report

Variant	rs62119718
Chromosome Location	chr2:15639240-15639241
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:15633866..15636973-chr2:15638858..15641675,3	K562	blood:
2	chr2:15633866..15636733-chr2:15638858..15641675,3	K562	blood:
3	chr2:15635035..15640154-chr2:15643939..15647891,5	K562	blood:
4	chr2:15638761..15641462-chr2:15644173..15646714,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62119500	1.00[AFR][1000 genomes]
rs62119536	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515567	chr2:15004748-15906778	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv529077	chr2:15143950-15722947	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:15589000-15680200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:15593600-15646600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:15597200-15661800	Weak transcription	Stomach Mucosa	stomach
4	chr2:15606800-15650400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr2:15608600-15645200	Weak transcription	Hela-S3	cervix
6	chr2:15609000-15649200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:15613000-15693600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:15613400-15642600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:15613600-15698200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:15614000-15643600	Weak transcription	NHDF-Ad	bronchial
11	chr2:15614000-15644200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr2:15614000-15650400	Weak transcription	Right Ventricle	heart
13	chr2:15614000-15650400	Weak transcription	A549	lung
14	chr2:15614200-15642200	Weak transcription	GM12878-XiMat	blood
15	chr2:15614200-15697800	Weak transcription	Small Intestine	intestine
16	chr2:15614400-15642400	Weak transcription	Spleen	Spleen
17	chr2:15614400-15649200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr2:15614400-15650400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr2:15614400-15698200	Weak transcription	Esophagus	oesophagus
20	chr2:15615400-15674000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr2:15621600-15642000	Weak transcription	NH-A	brain
22	chr2:15621600-15642200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr2:15621600-15649200	Weak transcription	Fetal Brain Female	brain
24	chr2:15621800-15667600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr2:15622000-15649200	Weak transcription	Brain Substantia Nigra	brain
26	chr2:15622400-15642400	Weak transcription	Brain Anterior Caudate	brain
27	chr2:15622600-15642800	Weak transcription	Colon Smooth Muscle	Colon
28	chr2:15622600-15643400	Weak transcription	NHLF	lung
29	chr2:15622600-15652400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:15622600-15699600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr2:15622600-15700600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr2:15622800-15642600	Weak transcription	Colonic Mucosa	Colon
33	chr2:15622800-15650000	Weak transcription	Lung	lung
34	chr2:15622800-15650600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr2:15622800-15652400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr2:15622800-15700200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr2:15623200-15642200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr2:15623800-15645800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr2:15626200-15699400	Weak transcription	Brain Germinal Matrix	brain
40	chr2:15626400-15652400	Weak transcription	Gastric	stomach
41	chr2:15626600-15650400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr2:15627800-15642200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr2:15627800-15648400	Weak transcription	HSMMtube	muscle
44	chr2:15627800-15650800	Weak transcription	NHEK	skin
45	chr2:15628000-15641800	Weak transcription	Ovary	ovary
46	chr2:15628000-15642200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr2:15628000-15642200	Weak transcription	Thymus	Thymus
48	chr2:15628000-15642200	Weak transcription	K562	blood
49	chr2:15628000-15643200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr2:15628000-15643400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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