The 2.0 version of rSNPBase

Variant report

Variant rs62121164
Chromosome Location chr2:9782397-9782398
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:9775000-9782800 Weak transcription H9 Cell Line embryonic stem cell
2 chr2:9778600-9782800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr2:9778800-9783800 Weak transcription Esophagus oesophagus
4 chr2:9778800-9783800 Weak transcription Pancreas Pancrea
5 chr2:9778800-9784000 Weak transcription Fetal Intestine Large intestine
6 chr2:9778800-9788400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr2:9779000-9783600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr2:9779400-9782600 Weak transcription iPS-15b Cell Line embryonic stem cell
9 chr2:9779400-9784800 Weak transcription Pancreatic Islets Pancreatic Islet
10 chr2:9779400-9786400 Weak transcription HUES6 Cell Line embryonic stem cell
11 chr2:9779600-9789400 Weak transcription HUES64 Cell Line embryonic stem cell
12 chr2:9779800-9783400 Enhancers Brain Substantia Nigra brain
13 chr2:9779800-9784400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr2:9779800-9784400 Weak transcription Fetal Intestine Small intestine
15 chr2:9780000-9786400 Weak transcription HSMMtube muscle
16 chr2:9780200-9782800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr2:9780200-9782800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr2:9780200-9786400 Weak transcription Lung lung
19 chr2:9780200-9786400 Weak transcription HSMM muscle
20 chr2:9780400-9782800 Weak transcription Placenta Placenta
21 chr2:9780400-9783200 Enhancers Brain Inferior Temporal Lobe brain
22 chr2:9780400-9783800 Weak transcription Placenta Amnion Placenta Amnion
23 chr2:9780400-9785200 Weak transcription Fetal Lung lung
24 chr2:9780600-9782600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr2:9780800-9788000 Weak transcription Fetal Heart heart
26 chr2:9781000-9782400 Weak transcription Brain Angular Gyrus brain
27 chr2:9781000-9782600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr2:9781000-9782800 Weak transcription Brain Cingulate Gyrus brain
29 chr2:9781000-9783800 Weak transcription NHEK skin
30 chr2:9781000-9784600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr2:9781000-9785400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr2:9781000-9785400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
33 chr2:9781000-9786400 Weak transcription Ovary ovary
34 chr2:9781200-9783800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr2:9781400-9783200 Enhancers Primary T cells fromperipheralblood blood
36 chr2:9781600-9782600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
37 chr2:9781600-9782600 Enhancers GM12878-XiMat blood
38 chr2:9781600-9782800 Enhancers Primary T helper naive cells from peripheral blood blood
39 chr2:9781600-9783000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
40 chr2:9781800-9783000 Enhancers Brain Hippocampus Middle brain
41 chr2:9782000-9782600 Weak transcription Primary B cells from peripheral blood blood
42 chr2:9782000-9782800 Weak transcription HMEC breast
43 chr2:9782000-9783400 Weak transcription A549 lung
44 chr2:9782200-9782600 Enhancers K562 blood
45 chr2:9782200-9784000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015