Variant report

Variant	rs72777067
Chromosome Location	chr2:9795825-9795826
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:9769776..9771505-chr2:9795001..9797519,2	K562	blood:
2	chr2:9778018..9780568-chr2:9793790..9796630,2	K562	blood:
3	chr2:9786319..9789288-chr2:9795169..9797264,3	K562	blood:
4	chr2:9790369..9792598-chr2:9793390..9795838,2	MCF-7	breast:
5	chr2:9782654..9789334-chr2:9794560..9799702,7	MCF-7	breast:
6	chr2:9613633..9616177-chr2:9794097..9796795,2	MCF-7	breast:
7	chr2:9786319..9790295-chr2:9795169..9796873,3	K562	blood:

Variant related genes	Relation type
ENSG00000134308	Chromatin interaction
ENSG00000240687	Chromatin interaction
ENSG00000134330	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10187701	1.00[ASN][1000 genomes]
rs10203320	1.00[ASN][1000 genomes]
rs10495568	1.00[ASN][1000 genomes]
rs11695174	1.00[ASN][1000 genomes]
rs1534043	1.00[ASN][1000 genomes]
rs16867104	1.00[ASN][1000 genomes]
rs17453871	1.00[ASN][1000 genomes]
rs55921604	1.00[ASN][1000 genomes]
rs62121160	1.00[ASN][1000 genomes]
rs62121164	1.00[ASN][1000 genomes]
rs62121165	1.00[ASN][1000 genomes]
rs62129867	1.00[ASN][1000 genomes]
rs62129868	1.00[ASN][1000 genomes]
rs72777055	1.00[ASN][1000 genomes]
rs72780951	1.00[ASN][1000 genomes]
rs868095	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580915	chr2:9308148-9844178	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1011802	chr2:9766171-9808284	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9789400-9796600	Weak transcription	Gastric	stomach
2	chr2:9789400-9797600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:9789600-9796400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:9790800-9797400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:9790800-9799200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:9790800-9801000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:9792800-9801600	Weak transcription	Spleen	Spleen
8	chr2:9794000-9796800	Enhancers	Brain Substantia Nigra	brain
9	chr2:9794200-9797200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:9794200-9799400	Enhancers	HMEC	breast
11	chr2:9794400-9796600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr2:9794400-9797600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr2:9794400-9797600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr2:9794400-9797600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:9794400-9797600	Enhancers	Placenta Amnion	Placenta Amnion
16	chr2:9794400-9797600	Enhancers	NHEK	skin
17	chr2:9794400-9798000	Enhancers	NHLF	lung
18	chr2:9794400-9799600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr2:9794400-9800400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr2:9794600-9796000	Enhancers	NH-A	brain
21	chr2:9794600-9796800	Enhancers	K562	blood
22	chr2:9794600-9798400	Enhancers	NHDF-Ad	bronchial
23	chr2:9794600-9799600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr2:9794800-9797000	Weak transcription	Ovary	ovary
25	chr2:9794800-9797400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr2:9794800-9797800	Enhancers	HUVEC	blood vessel
27	chr2:9794800-9799000	Weak transcription	Placenta	Placenta
28	chr2:9794800-9800400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr2:9795000-9796600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr2:9795000-9797400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr2:9795000-9798000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr2:9795000-9798600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr2:9795000-9799200	Enhancers	Osteobl	bone
34	chr2:9795200-9796200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr2:9795200-9796400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr2:9795200-9796600	Weak transcription	Brain Angular Gyrus	brain
37	chr2:9795200-9796600	Weak transcription	Brain Hippocampus Middle	brain
38	chr2:9795200-9798000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr2:9795400-9796000	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr2:9795400-9796200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr2:9795400-9796200	Flanking Active TSS	Hela-S3	cervix
42	chr2:9795400-9796400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr2:9795400-9796400	Flanking Active TSS	GM12878-XiMat	blood
44	chr2:9795400-9796800	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr2:9795400-9797000	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr2:9795400-9797000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr2:9795400-9797200	Bivalent Enhancer	HepG2	liver
48	chr2:9795400-9798000	Flanking Active TSS	A549	lung
49	chr2:9795400-9798200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr2:9795400-9798200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links