Variant report

Variant	rs62133327
Chromosome Location	chr2:37688768-37688769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2888498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58141632	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59627342	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62133325	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62133329	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62133331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37677800-37695400	Weak transcription	Aorta	Aorta
2	chr2:37684000-37691200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:37685800-37688800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:37685800-37688800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr2:37686000-37688800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr2:37686000-37688800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr2:37687600-37688800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:37687800-37688800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr2:37688400-37688800	Enhancers	K562	blood
10	chr2:37688400-37693600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr2:37688400-37693800	Weak transcription	Fetal Heart	heart
12	chr2:37688600-37688800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr2:37688600-37691000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr2:37688600-37691400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr2:37688600-37691400	Weak transcription	NHDF-Ad	bronchial
16	chr2:37688600-37693800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:37688600-37693800	Weak transcription	Osteobl	bone
18	chr2:37688600-37696800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr2:37688600-37697600	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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