Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37700411..37701975-chr2:37710008..37711802,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10170761	1.00[CHB][hapmap]
rs11896614	1.00[CHB][hapmap]
rs13414561	1.00[CHB][hapmap]
rs13429945	1.00[CHB][hapmap]
rs17410072	1.00[CHB][hapmap]
rs58141632	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59627342	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62133325	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62133327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62133329	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62133331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726768	1.00[CHB][hapmap]
rs6726921	1.00[CHB][hapmap]
rs6730342	1.00[CHB][hapmap]
rs6733861	1.00[CHB][hapmap]
rs6749793	1.00[CHB][hapmap]
rs6754376	1.00[CHB][hapmap]
rs7556959	1.00[CHB][hapmap]
rs7559558	1.00[CHB][hapmap]
rs759460	1.00[CHB][hapmap]
rs9309005	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37699400-37701800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:37700600-37703400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:37700600-37703400	Weak transcription	Aorta	Aorta
4	chr2:37700600-37703400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:37700600-37710000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:37700800-37701800	Weak transcription	Liver	Liver
7	chr2:37700800-37702000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:37700800-37702400	Weak transcription	Fetal Lung	lung
9	chr2:37700800-37703000	Weak transcription	Fetal Heart	heart
10	chr2:37700800-37703600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:37700800-37703800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr2:37700800-37704600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:37700800-37705000	Weak transcription	NHLF	lung
14	chr2:37701000-37703200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:37701000-37703600	Weak transcription	Osteobl	bone
16	chr2:37701000-37704400	Weak transcription	NHDF-Ad	bronchial
17	chr2:37701400-37701600	Enhancers	GM12878-XiMat	blood

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