Variant report

Variant	rs62133462
Chromosome Location	chr2:37789032-37789033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37779367..37783955-chr2:37786259..37791654,6	K562	blood:
2	chr2:37786608..37790547-chr2:37791244..37795872,7	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4524108	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4633908	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62135623	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7419452	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3353978	chr2:37788972-37789366	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37781400-37791200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr2:37782000-37789200	Enhancers	Primary B cells from peripheral blood	blood
3	chr2:37783400-37790800	Weak transcription	Primary T cells from cord blood	blood
4	chr2:37783400-37795600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr2:37784000-37789400	Enhancers	GM12878-XiMat	blood
6	chr2:37786800-37790200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr2:37787000-37790200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr2:37787200-37790400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:37787400-37789200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr2:37787400-37789200	Enhancers	Adipose Nuclei	Adipose
11	chr2:37787400-37789200	Enhancers	Fetal Thymus	thymus
12	chr2:37787400-37789200	Enhancers	Left Ventricle	heart
13	chr2:37787400-37789200	Enhancers	Ovary	ovary
14	chr2:37787400-37789400	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr2:37787400-37790400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:37787400-37790800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:37787400-37791600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr2:37787400-37792000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr2:37787600-37789200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr2:37787600-37790000	Enhancers	HMEC	breast
21	chr2:37787600-37791000	Enhancers	HUVEC	blood vessel
22	chr2:37787600-37793400	Enhancers	NHDF-Ad	bronchial
23	chr2:37787800-37789200	Enhancers	Stomach Smooth Muscle	stomach
24	chr2:37787800-37789600	Enhancers	Placenta Amnion	Placenta Amnion
25	chr2:37788000-37789200	Enhancers	Colon Smooth Muscle	Colon
26	chr2:37788000-37789600	Enhancers	HSMM	muscle
27	chr2:37788000-37790200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr2:37788000-37790200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr2:37788000-37790800	Enhancers	NHEK	skin
30	chr2:37788000-37791400	Enhancers	Osteobl	bone
31	chr2:37788200-37789200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr2:37788200-37792000	Enhancers	NHLF	lung
33	chr2:37788400-37789400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr2:37788400-37789600	Flanking Active TSS	A549	lung
35	chr2:37788400-37789800	Flanking Active TSS	K562	blood
36	chr2:37788400-37794800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr2:37788600-37789200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr2:37788600-37789400	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr2:37788600-37791200	Enhancers	Hela-S3	cervix
40	chr2:37788600-37791400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr2:37788800-37789200	Enhancers	Muscle Satellite Cultured Cells	--
42	chr2:37788800-37789200	Enhancers	Thymus	Thymus
43	chr2:37788800-37789200	Enhancers	NH-A	brain
44	chr2:37788800-37789600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr2:37788800-37789600	Enhancers	Right Atrium	heart
46	chr2:37789000-37789200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr2:37789000-37789200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr2:37789000-37789200	Enhancers	Primary hematopoietic stem cells	blood
49	chr2:37789000-37789200	Enhancers	Gastric	stomach
50	chr2:37789000-37789200	Enhancers	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links