Variant report

Variant	rs62137565
Chromosome Location	chr2:53936496-53936497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11897282	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11901698	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13408029	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17520505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17521008	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2008082	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2302797	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2542572	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2542578	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2542580	0.86[EUR][1000 genomes]
rs2542581	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2542582	0.81[AFR][1000 genomes]
rs2543629	0.82[EUR][1000 genomes]
rs2692523	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35487539	0.82[AMR][1000 genomes]
rs35772199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3770394	0.82[ASN][1000 genomes]
rs3770395	0.82[ASN][1000 genomes]
rs3770399	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3770411	0.85[ASN][1000 genomes]
rs4116709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56214822	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56228834	0.87[ASN][1000 genomes]
rs62137573	0.83[ASN][1000 genomes]
rs62137602	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62137606	0.82[ASN][1000 genomes]
rs6730006	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs719127	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72901256	0.83[ASN][1000 genomes]
rs7558968	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7583622	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7600817	0.82[ASN][1000 genomes]
rs805435	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916267	chr2:53747525-53955999	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv984439	chr2:53861720-53955437	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1003263	chr2:53863287-54055359	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv535720	chr2:53863287-54055359	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1011449	chr2:53894529-53947781	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1009107	chr2:53896767-53946913	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1014949	chr2:53896767-53947781	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1011400	chr2:53899956-53947781	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv834058	chr2:53900674-54072011	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	esv1844655	chr2:53929855-53972693	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53896800-53936600	Weak transcription	Aorta	Aorta
2	chr2:53898000-53957400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr2:53900800-53936800	Weak transcription	NHLF	lung
4	chr2:53908600-53982200	Weak transcription	Small Intestine	intestine
5	chr2:53910000-53941600	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:53910000-53994000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr2:53910200-53990600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr2:53918400-53994000	Weak transcription	Fetal Heart	heart
9	chr2:53925400-53979400	Weak transcription	Psoas Muscle	Psoas
10	chr2:53927600-53937200	Weak transcription	HSMM	muscle
11	chr2:53927600-53960200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:53933800-53937200	Strong transcription	Brain Angular Gyrus	brain
13	chr2:53933800-53938000	Strong transcription	Skeletal Muscle Female	skeletal muscle
14	chr2:53933800-53944000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr2:53934000-53937800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:53934200-53937000	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr2:53934200-53938200	Strong transcription	Adipose Nuclei	Adipose
18	chr2:53934200-53938400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
19	chr2:53934200-53942200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr2:53934400-53936800	Strong transcription	Stomach Smooth Muscle	stomach
21	chr2:53934400-53937200	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr2:53934400-53937400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr2:53934800-53937000	Strong transcription	Fetal Intestine Large	intestine
24	chr2:53934800-53937200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr2:53934800-53938200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr2:53934800-53939200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr2:53935000-53937200	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr2:53935000-53937400	ZNF genes & repeats	Brain Germinal Matrix	brain
29	chr2:53935200-53936600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr2:53935200-53936600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
31	chr2:53935200-53937000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr2:53935200-53937000	ZNF genes & repeats	Fetal Brain Female	brain
33	chr2:53935200-53937200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr2:53935200-53937200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
35	chr2:53935200-53937200	ZNF genes & repeats	Thymus	Thymus
36	chr2:53935200-53937400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr2:53935200-53937400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
38	chr2:53935200-53937400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
39	chr2:53935200-53937400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr2:53935200-53937600	ZNF genes & repeats	Fetal Brain Male	brain
41	chr2:53935200-53937800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr2:53935200-53938000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
43	chr2:53935200-53938000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr2:53935200-53938000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
45	chr2:53935200-53938200	ZNF genes & repeats	Fetal Intestine Small	intestine
46	chr2:53935200-53938400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr2:53935200-53938600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
48	chr2:53935200-53938600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
49	chr2:53935200-53939000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
50	chr2:53935400-53936600	ZNF genes & repeats	Colonic Mucosa	Colon

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