The 2.0 version of rSNPBase

Variant report

Variant rs62141090
Chromosome Location chr2:30378247-30378248
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:30371000-30380200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr2:30371000-30380600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr2:30371400-30380000 Weak transcription Esophagus oesophagus
4 chr2:30371400-30380000 Weak transcription Dnd41 blood
5 chr2:30371400-30380200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr2:30371400-30384800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr2:30371600-30380200 Weak transcription Colonic Mucosa Colon
8 chr2:30371800-30385000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
9 chr2:30372200-30378800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr2:30372400-30378400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
11 chr2:30372800-30378600 Weak transcription Brain Cingulate Gyrus brain
12 chr2:30372800-30378600 Weak transcription Stomach Mucosa stomach
13 chr2:30372800-30379600 Weak transcription Fetal Stomach stomach
14 chr2:30372800-30379600 Weak transcription Lung lung
15 chr2:30372800-30380200 Weak transcription Fetal Brain Male brain
16 chr2:30373000-30379600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr2:30373200-30378600 Weak transcription Fetal Kidney kidney
18 chr2:30373200-30379400 Weak transcription Brain Angular Gyrus brain
19 chr2:30373200-30379600 Weak transcription Brain Anterior Caudate brain
20 chr2:30373200-30379600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr2:30373200-30379800 Weak transcription Fetal Brain Female brain
22 chr2:30373200-30380200 Weak transcription Brain Germinal Matrix brain
23 chr2:30373200-30380400 Weak transcription Cortex derived primary cultured neurospheres brain
24 chr2:30373200-30396400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
25 chr2:30373400-30378800 Weak transcription Left Ventricle heart
26 chr2:30373400-30379200 Weak transcription Brain Hippocampus Middle brain
27 chr2:30373400-30380200 Weak transcription Placenta Amnion Placenta Amnion
28 chr2:30373400-30381400 Weak transcription HMEC breast
29 chr2:30373600-30378800 Weak transcription NHEK skin
30 chr2:30373800-30379600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr2:30373800-30379600 Weak transcription Fetal Lung lung
32 chr2:30373800-30380200 Weak transcription Stomach Smooth Muscle stomach
33 chr2:30373800-30380600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr2:30373800-30385200 Strong transcription Primary monocytes fromperipheralblood blood
35 chr2:30374000-30378400 Weak transcription HepG2 liver
36 chr2:30374000-30378600 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr2:30374000-30378800 Weak transcription Fetal Intestine Small intestine
38 chr2:30374000-30378800 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr2:30374000-30379000 Weak transcription Primary hematopoietic stem cells short term culture blood
40 chr2:30374000-30379200 Weak transcription Skeletal Muscle Female skeletal muscle
41 chr2:30374000-30379400 Weak transcription Ovary ovary
42 chr2:30374000-30379400 Weak transcription Rectal Mucosa Donor 29 rectum
43 chr2:30374000-30379600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr2:30374000-30379600 Weak transcription Skeletal Muscle Male skeletal muscle
45 chr2:30374000-30379600 Weak transcription NHLF lung
46 chr2:30374000-30380200 Weak transcription Brain Substantia Nigra brain
47 chr2:30374000-30380600 Weak transcription Right Ventricle heart
48 chr2:30374000-30381400 Weak transcription H9 Cell Line embryonic stem cell
49 chr2:30374000-30385200 Strong transcription Placenta Placenta
50 chr2:30374000-30386000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015