Variant report

Variant	rs9967840
Chromosome Location	chr2:30567125-30567126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1001202	1.00[ASN][1000 genomes]
rs1001203	1.00[ASN][1000 genomes]
rs11127261	1.00[ASN][1000 genomes]
rs11127262	1.00[ASN][1000 genomes]
rs11675079	1.00[ASN][1000 genomes]
rs11679132	1.00[ASN][1000 genomes]
rs11679137	1.00[ASN][1000 genomes]
rs11681350	1.00[ASN][1000 genomes]
rs11688651	1.00[ASN][1000 genomes]
rs11690392	1.00[ASN][1000 genomes]
rs11690435	1.00[ASN][1000 genomes]
rs11690629	1.00[ASN][1000 genomes]
rs11694534	1.00[ASN][1000 genomes]
rs11694679	1.00[ASN][1000 genomes]
rs12714304	1.00[ASN][1000 genomes]
rs12986509	1.00[ASN][1000 genomes]
rs12989107	1.00[ASN][1000 genomes]
rs12996578	1.00[ASN][1000 genomes]
rs13026847	1.00[ASN][1000 genomes]
rs13027149	1.00[ASN][1000 genomes]
rs13030064	1.00[ASN][1000 genomes]
rs13422834	1.00[ASN][1000 genomes]
rs34097147	1.00[ASN][1000 genomes]
rs35163883	1.00[ASN][1000 genomes]
rs62141090	1.00[ASN][1000 genomes]
rs62141122	1.00[ASN][1000 genomes]
rs6752940	0.85[AMR][1000 genomes]
rs71444463	1.00[ASN][1000 genomes]
rs829585	1.00[ASN][1000 genomes]
rs906864	1.00[ASN][1000 genomes]
rs9967751	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv833648	chr2:30505882-30696275	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv2663	chr2:30522750-30567544	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30554200-30569800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:30558000-30569400	Weak transcription	Esophagus	oesophagus
3	chr2:30560400-30569400	Weak transcription	Left Ventricle	heart
4	chr2:30560400-30569400	Weak transcription	Right Ventricle	heart
5	chr2:30561000-30569400	Weak transcription	Spleen	Spleen
6	chr2:30565200-30568600	Weak transcription	Fetal Heart	heart
7	chr2:30566400-30567200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:30567000-30574400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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