Variant report

Variant	rs62150081
Chromosome Location	chr2:100357704-100357705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13030932	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13407928	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13428668	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1404176	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1464757	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2091150	0.83[AMR][1000 genomes]
rs2309729	0.89[AMR][1000 genomes]
rs2871316	0.91[AMR][1000 genomes]
rs34116173	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34369751	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3863006	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4332968	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4851229	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6542890	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6542903	0.80[AMR][1000 genomes]
rs6744510	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6746146	0.85[AMR][1000 genomes]
rs6756821	0.82[AMR][1000 genomes]
rs7561009	0.91[AMR][1000 genomes]
rs868665	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100344000-100360200	Weak transcription	Brain Germinal Matrix	brain
2	chr2:100346200-100379400	Weak transcription	Fetal Lung	lung
3	chr2:100346400-100358600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:100346400-100358600	Weak transcription	Primary T cells from cord blood	blood
5	chr2:100346400-100358600	Weak transcription	Left Ventricle	heart
6	chr2:100346400-100359400	Weak transcription	Ovary	ovary
7	chr2:100346800-100358400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr2:100346800-100359600	Weak transcription	Fetal Brain Male	brain
9	chr2:100347400-100361600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:100347600-100358400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr2:100348200-100359000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr2:100352200-100358400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:100355800-100358800	Weak transcription	Primary B cells from cord blood	blood
14	chr2:100356600-100361000	Weak transcription	Fetal Stomach	stomach
15	chr2:100356600-100370400	Weak transcription	Colon Smooth Muscle	Colon
16	chr2:100357000-100359200	Weak transcription	Fetal Thymus	thymus
17	chr2:100357600-100359200	Weak transcription	Liver	Liver
18	chr2:100357600-100369200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr2:100357600-100389400	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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