Variant report

Variant	rs6542903
Chromosome Location	chr2:100462705-100462706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10191077	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10194527	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10199548	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10865033	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10865034	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12478013	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13416974	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13423929	0.88[EUR][1000 genomes]
rs13428668	0.88[AMR][1000 genomes]
rs1344701	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1344702	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1346621	0.92[EUR][1000 genomes]
rs1366763	0.91[EUR][1000 genomes]
rs1366766	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1404176	0.82[AMR][1000 genomes]
rs1429268	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1429269	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1594111	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1594113	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1608640	0.81[EUR][1000 genomes]
rs2043006	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2091150	0.80[AMR][1000 genomes]
rs2871310	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3863006	0.82[AMR][1000 genomes]
rs4286327	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4481043	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4521099	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4850916	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4851229	0.88[AMR][1000 genomes]
rs4851234	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4851235	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62150081	0.80[AMR][1000 genomes]
rs6542890	0.88[AMR][1000 genomes]
rs6542900	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6542901	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6542902	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6723474	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6725716	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6732358	0.80[AMR][1000 genomes]
rs6743473	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6744510	0.84[AMR][1000 genomes]
rs6747845	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6756821	0.88[AMR][1000 genomes]
rs7560078	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7573572	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7586604	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7596023	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2757820	chr2:100380891-100546675	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759078	chr2:100380891-100546675	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv2845	chr2:100421826-100466558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100443800-100496800	Weak transcription	Ovary	ovary
2	chr2:100444400-100465600	Weak transcription	Liver	Liver
3	chr2:100450600-100466200	Weak transcription	Fetal Kidney	kidney
4	chr2:100454600-100466600	Weak transcription	Pancreas	Pancrea
5	chr2:100454600-100477400	Weak transcription	Primary T cells from cord blood	blood
6	chr2:100458400-100464800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:100459200-100465600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:100460000-100465600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:100460000-100467800	Weak transcription	Fetal Lung	lung
10	chr2:100460600-100463000	Weak transcription	Primary B cells from cord blood	blood
11	chr2:100460800-100464200	Weak transcription	Fetal Brain Female	brain
12	chr2:100461800-100463000	Weak transcription	Fetal Brain Male	brain
13	chr2:100461800-100472600	Strong transcription	Primary B cells from peripheral blood	blood

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