Variant report

Variant	rs62156276
Chromosome Location	chr2:98971489-98971490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs17427314	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17427356	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17427531	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17427573	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17427636	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17427726	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17428000	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17428212	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17428262	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17428318	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17428528	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17428626	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17428843	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17429145	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17429278	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17493076	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17493153	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17493543	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17493879	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17500449	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17500559	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17500893	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17501122	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62155276	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155278	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155279	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155280	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155281	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155282	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155283	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155284	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155285	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155286	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155288	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155289	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155290	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155291	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155292	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155293	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155294	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62155295	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155296	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155297	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155300	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155301	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155302	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155303	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155305	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155308	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155309	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155310	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155311	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155313	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155314	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155315	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155316	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155318	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62155348	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62155349	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62155351	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62155352	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62155353	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62155356	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62155357	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62155359	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62156260	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62156262	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62156275	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62156725	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62156726	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62156727	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62156728	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62156729	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62156730	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62156731	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62156732	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62156733	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62156738	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62156739	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62156741	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62156742	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62156743	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157893	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62157894	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62157895	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157896	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157897	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157898	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157899	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157900	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157902	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157903	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157904	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157905	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157906	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157909	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157910	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157911	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157912	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157913	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157915	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157917	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157918	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157919	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62157920	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1008645	chr2:98915767-99010743	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1010466	chr2:98938886-98998109	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013617	chr2:98943377-99004173	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv960976	chr2:98967643-98973191	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98965800-98972400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:98970400-98972400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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