Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17023031	0.87[EUR][1000 genomes]
rs17351403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17351500	0.85[AMR][1000 genomes]
rs17436026	0.85[AMR][1000 genomes]
rs17436483	0.85[AMR][1000 genomes]
rs17436511	0.85[AMR][1000 genomes]
rs17436594	0.85[AMR][1000 genomes]
rs17436615	0.85[AMR][1000 genomes]
rs17436656	0.85[AMR][1000 genomes]
rs17436719	0.85[AMR][1000 genomes]
rs17436761	0.85[AMR][1000 genomes]
rs17436782	0.85[AMR][1000 genomes]
rs17716597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17783548	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34454377	0.85[AMR][1000 genomes]
rs62147619	0.85[AMR][1000 genomes]
rs62147620	0.85[AMR][1000 genomes]
rs62147621	0.85[AMR][1000 genomes]
rs62150080	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62150082	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62150083	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62156490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62156491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62156492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62156493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156497	1.00[EUR][1000 genomes]
rs62156498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156500	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs940459	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100286600-100336800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:100303600-100336800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr2:100315000-100336800	Weak transcription	Aorta	Aorta
4	chr2:100322000-100340000	Weak transcription	Primary T cells from cord blood	blood
5	chr2:100325400-100329800	Strong transcription	Primary B cells from cord blood	blood
6	chr2:100327400-100334600	Strong transcription	Primary B cells from peripheral blood	blood
7	chr2:100327800-100344400	Weak transcription	Ovary	ovary
8	chr2:100328000-100336600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:100328000-100338200	Weak transcription	Fetal Lung	lung
10	chr2:100328200-100332600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:100328600-100331200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:100328800-100333000	Weak transcription	Fetal Brain Female	brain
13	chr2:100329000-100330000	Weak transcription	Fetal Muscle Leg	muscle
14	chr2:100329000-100339200	Weak transcription	Fetal Brain Male	brain

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