Variant report

Variant	rs17436511
Chromosome Location	chr2:100469762-100469763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10460488	0.83[EUR][1000 genomes]
rs13405175	0.85[EUR][1000 genomes]
rs13419977	0.83[EUR][1000 genomes]
rs13433082	0.83[EUR][1000 genomes]
rs17023084	0.83[EUR][1000 genomes]
rs17023253	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17023254	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17023415	1.00[YRI][hapmap]
rs17351403	0.85[AMR][1000 genomes]
rs17351500	1.00[AMR][1000 genomes]
rs17351577	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17352234	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17436026	1.00[AMR][1000 genomes]
rs17436127	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17436483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17436594	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17436615	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17436656	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17436705	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17436719	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17436761	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17436782	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17716597	0.85[AMR][1000 genomes]
rs34454377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62147569	0.88[EUR][1000 genomes]
rs62147614	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62147617	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62147618	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62147619	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62147620	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62147621	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62147648	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62147649	0.88[EUR][1000 genomes]
rs62150080	1.00[AMR][1000 genomes]
rs62150082	1.00[AMR][1000 genomes]
rs62150083	1.00[AMR][1000 genomes]
rs62150103	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62150104	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62150105	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62150106	0.82[EUR][1000 genomes]
rs62150108	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62150110	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62150111	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62150114	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62150116	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62156490	0.85[AMR][1000 genomes]
rs62156491	0.85[AMR][1000 genomes]
rs62156492	0.85[AMR][1000 genomes]
rs62156493	0.85[AMR][1000 genomes]
rs62156494	0.85[AMR][1000 genomes]
rs62156495	0.85[AMR][1000 genomes]
rs62156496	0.85[AMR][1000 genomes]
rs62156498	0.85[AMR][1000 genomes]
rs62156500	0.85[AMR][1000 genomes]
rs6711546	0.85[EUR][1000 genomes]
rs6755935	0.83[EUR][1000 genomes]
rs6761899	0.83[EUR][1000 genomes]
rs940459	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2757820	chr2:100380891-100546675	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759078	chr2:100380891-100546675	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100443800-100496800	Weak transcription	Ovary	ovary
2	chr2:100454600-100477400	Weak transcription	Primary T cells from cord blood	blood
3	chr2:100461800-100472600	Strong transcription	Primary B cells from peripheral blood	blood
4	chr2:100463800-100471600	Enhancers	Fetal Brain Male	brain
5	chr2:100465400-100471000	Enhancers	Fetal Brain Female	brain
6	chr2:100468000-100471600	Enhancers	Liver	Liver
7	chr2:100468800-100470800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:100469000-100471400	Strong transcription	Primary B cells from cord blood	blood
9	chr2:100469000-100476200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr2:100469200-100473000	Weak transcription	Fetal Lung	lung
11	chr2:100469200-100474400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:100469600-100470800	Weak transcription	Fetal Kidney	kidney

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