Variant report

Variant	rs6761899
Chromosome Location	chr2:100393342-100393343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100393300..100395336-chr2:100401507..100403583,2	MCF-7	breast:
2	chr2:100392836..100396080-chr2:100396226..100398545,3	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10174396	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10177312	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10185545	1.00[ASN][1000 genomes]
rs10206307	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10460487	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10460488	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496341	1.00[ASN][1000 genomes]
rs13405175	0.97[EUR][1000 genomes]
rs13419977	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13433082	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023084	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023253	0.86[EUR][1000 genomes]
rs17023254	0.86[EUR][1000 genomes]
rs17351577	0.97[EUR][1000 genomes]
rs17352234	0.86[EUR][1000 genomes]
rs17436127	0.97[EUR][1000 genomes]
rs17436483	0.86[EUR][1000 genomes]
rs17436511	0.83[EUR][1000 genomes]
rs17436594	0.86[EUR][1000 genomes]
rs17436615	0.86[EUR][1000 genomes]
rs17436656	0.86[EUR][1000 genomes]
rs17436705	0.86[EUR][1000 genomes]
rs17436719	0.86[EUR][1000 genomes]
rs17436761	0.86[EUR][1000 genomes]
rs17436782	0.86[EUR][1000 genomes]
rs2163043	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28520449	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34454377	0.86[EUR][1000 genomes]
rs36003621	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4369915	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62147614	0.86[EUR][1000 genomes]
rs62147617	0.86[EUR][1000 genomes]
rs62147618	0.80[EUR][1000 genomes]
rs62147619	0.86[EUR][1000 genomes]
rs62147621	0.86[EUR][1000 genomes]
rs62147648	0.86[EUR][1000 genomes]
rs62150103	0.97[EUR][1000 genomes]
rs62150104	0.97[EUR][1000 genomes]
rs62150105	0.97[EUR][1000 genomes]
rs62150106	0.94[EUR][1000 genomes]
rs62150108	0.97[EUR][1000 genomes]
rs62150110	0.94[EUR][1000 genomes]
rs62150111	0.94[EUR][1000 genomes]
rs62150114	0.97[EUR][1000 genomes]
rs62150116	0.97[EUR][1000 genomes]
rs6705968	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6711546	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6731353	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6742771	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6755935	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6757828	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7604438	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs940459	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2757820	chr2:100380891-100546675	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759078	chr2:100380891-100546675	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1010971	chr2:100387986-100431935	Weak transcription ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100360000-100394600	Weak transcription	Dnd41	blood
2	chr2:100384200-100404400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr2:100386800-100394600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:100389400-100394800	Weak transcription	Gastric	stomach
5	chr2:100389600-100393600	Weak transcription	Fetal Stomach	stomach
6	chr2:100389600-100399400	Weak transcription	Ovary	ovary
7	chr2:100389600-100400800	Weak transcription	Placenta	Placenta
8	chr2:100389800-100394000	Weak transcription	Thymus	Thymus
9	chr2:100390200-100394400	Weak transcription	Fetal Thymus	thymus
10	chr2:100390200-100394800	Weak transcription	Fetal Lung	lung
11	chr2:100390600-100393800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr2:100391600-100394400	Enhancers	NHDF-Ad	bronchial
13	chr2:100391600-100394600	Enhancers	HSMMtube	muscle
14	chr2:100391600-100395200	Strong transcription	Primary B cells from cord blood	blood
15	chr2:100391600-100395600	Strong transcription	Primary B cells from peripheral blood	blood
16	chr2:100392200-100393600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr2:100392200-100394400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr2:100392400-100394000	Enhancers	Fetal Brain Female	brain
19	chr2:100392400-100394400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr2:100392400-100394400	Enhancers	HSMM	muscle
21	chr2:100392600-100393400	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr2:100392600-100393800	Weak transcription	NH-A	brain
23	chr2:100392600-100394000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr2:100392600-100394400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr2:100392800-100393600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:100392800-100394600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr2:100393000-100393600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr2:100393200-100393600	Enhancers	Brain Hippocampus Middle	brain
29	chr2:100393200-100393800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr2:100393200-100393800	Enhancers	Fetal Brain Male	brain
31	chr2:100393200-100394400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr2:100393200-100394600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr2:100393200-100395000	Strong transcription	Primary T cells from cord blood	blood

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