Variant report

Variant	rs2163043
Chromosome Location	chr2:100386801-100386802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100382265..100384877-chr2:100386362..100389420,3	K562	blood:
2	chr2:100380582..100383387-chr2:100384960..100390106,4	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10174396	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10177312	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185545	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10206307	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10460487	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10460488	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10496341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13419977	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13433082	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17022813	1.00[EUR][1000 genomes]
rs17023084	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28520449	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36003621	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4369915	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6705968	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731353	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6742771	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6755935	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6757828	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6761899	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7578030	1.00[EUR][1000 genomes]
rs7604438	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7605228	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2757820	chr2:100380891-100546675	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759078	chr2:100380891-100546675	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100357600-100389400	Weak transcription	Thymus	Thymus
2	chr2:100360000-100394600	Weak transcription	Dnd41	blood
3	chr2:100380000-100393200	Weak transcription	Primary T cells from cord blood	blood
4	chr2:100382400-100390600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr2:100383800-100388600	Weak transcription	Ovary	ovary
6	chr2:100384200-100404400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr2:100385400-100387200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
8	chr2:100386000-100387400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:100386200-100390000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr2:100386400-100387200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:100386400-100387400	Enhancers	Placenta	Placenta
12	chr2:100386400-100388000	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr2:100386400-100388200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr2:100386400-100389600	Enhancers	Primary hematopoietic stem cells	blood
15	chr2:100386600-100387200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:100386600-100387400	Enhancers	Duodenum Mucosa	Duodenum
17	chr2:100386600-100388800	Weak transcription	Fetal Kidney	kidney
18	chr2:100386800-100387000	Enhancers	Fetal Thymus	thymus
19	chr2:100386800-100388200	Genic enhancers	Primary B cells from cord blood	blood
20	chr2:100386800-100388200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:100386800-100394600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links