Variant report

Variant	rs6757828
Chromosome Location	chr2:100394539-100394540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100393300..100395336-chr2:100401507..100403583,2	MCF-7	breast:
2	chr2:100392836..100396080-chr2:100396226..100398545,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10174396	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10177312	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185545	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10206307	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10460487	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10460488	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10496341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13419977	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13433082	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17022813	1.00[EUR][1000 genomes]
rs17023084	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2163043	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28520449	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36003621	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4369915	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6705968	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731353	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6742771	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6755935	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6761899	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7578030	1.00[EUR][1000 genomes]
rs7604438	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7605228	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2757820	chr2:100380891-100546675	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759078	chr2:100380891-100546675	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1010971	chr2:100387986-100431935	Weak transcription ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100360000-100394600	Weak transcription	Dnd41	blood
2	chr2:100384200-100404400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr2:100386800-100394600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:100389400-100394800	Weak transcription	Gastric	stomach
5	chr2:100389600-100399400	Weak transcription	Ovary	ovary
6	chr2:100389600-100400800	Weak transcription	Placenta	Placenta
7	chr2:100390200-100394800	Weak transcription	Fetal Lung	lung
8	chr2:100391600-100394600	Enhancers	HSMMtube	muscle
9	chr2:100391600-100395200	Strong transcription	Primary B cells from cord blood	blood
10	chr2:100391600-100395600	Strong transcription	Primary B cells from peripheral blood	blood
11	chr2:100392800-100394600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr2:100393200-100394600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:100393200-100395000	Strong transcription	Primary T cells from cord blood	blood
14	chr2:100393600-100394600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:100393600-100396600	Weak transcription	Brain Hippocampus Middle	brain
16	chr2:100393800-100394600	Weak transcription	Fetal Brain Male	brain
17	chr2:100393800-100404000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr2:100394000-100394600	Strong transcription	Thymus	Thymus
19	chr2:100394000-100394800	Strong transcription	Primary hematopoietic stem cells	blood
20	chr2:100394000-100403000	Weak transcription	Fetal Brain Female	brain
21	chr2:100394400-100394600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:100394400-100394800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr2:100394400-100405800	Weak transcription	Lung	lung

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