Variant report

Variant	rs62156711
Chromosome Location	chr2:98859277-98859278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr2:98859105-98859392	HepG2	liver:	n/a	chr2:98859276-98859291
2	MAFK	chr2:98859112-98859465	HepG2	liver:	n/a	chr2:98859276-98859291
3	MAFK	chr2:98859128-98859417	IMR90	lung:	n/a	chr2:98859276-98859291
4	MAFF	chr2:98859107-98859421	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
VWA3B	TF binding region

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs17427314	1.00[AFR][1000 genomes]
rs17427356	1.00[AFR][1000 genomes]
rs17427531	1.00[AFR][1000 genomes]
rs17427573	1.00[AFR][1000 genomes]
rs17427636	1.00[AFR][1000 genomes]
rs17427726	1.00[AFR][1000 genomes]
rs17428000	1.00[AFR][1000 genomes]
rs17428212	1.00[AFR][1000 genomes]
rs17428262	1.00[AFR][1000 genomes]
rs17428318	1.00[AFR][1000 genomes]
rs17428528	1.00[AFR][1000 genomes]
rs17428626	1.00[AFR][1000 genomes]
rs17428843	1.00[AFR][1000 genomes]
rs17429145	1.00[AFR][1000 genomes]
rs17429278	1.00[AFR][1000 genomes]
rs17493076	1.00[AFR][1000 genomes]
rs17493153	1.00[AFR][1000 genomes]
rs17493543	1.00[AFR][1000 genomes]
rs17493879	1.00[AFR][1000 genomes]
rs17500449	1.00[AFR][1000 genomes]
rs17500559	1.00[AFR][1000 genomes]
rs17500893	1.00[AFR][1000 genomes]
rs17501122	1.00[AFR][1000 genomes]
rs62154934	1.00[AFR][1000 genomes]
rs62155276	1.00[AFR][1000 genomes]
rs62155278	1.00[AFR][1000 genomes]
rs62155279	1.00[AFR][1000 genomes]
rs62155280	1.00[AFR][1000 genomes]
rs62155282	1.00[AFR][1000 genomes]
rs62155283	1.00[AFR][1000 genomes]
rs62155284	1.00[AFR][1000 genomes]
rs62155285	1.00[AFR][1000 genomes]
rs62155286	1.00[AFR][1000 genomes]
rs62155288	1.00[AFR][1000 genomes]
rs62155289	1.00[AFR][1000 genomes]
rs62155290	1.00[AFR][1000 genomes]
rs62155291	1.00[AFR][1000 genomes]
rs62155292	1.00[AFR][1000 genomes]
rs62155293	1.00[AFR][1000 genomes]
rs62155294	1.00[AFR][1000 genomes]
rs62155295	1.00[AFR][1000 genomes]
rs62155296	1.00[AFR][1000 genomes]
rs62155297	1.00[AFR][1000 genomes]
rs62155300	1.00[AFR][1000 genomes]
rs62155301	1.00[AFR][1000 genomes]
rs62155302	1.00[AFR][1000 genomes]
rs62155303	1.00[AFR][1000 genomes]
rs62155305	1.00[AFR][1000 genomes]
rs62155308	1.00[AFR][1000 genomes]
rs62155309	1.00[AFR][1000 genomes]
rs62155310	1.00[AFR][1000 genomes]
rs62155311	1.00[AFR][1000 genomes]
rs62155314	1.00[AFR][1000 genomes]
rs62155315	1.00[AFR][1000 genomes]
rs62155316	1.00[AFR][1000 genomes]
rs62155318	1.00[AFR][1000 genomes]
rs62155348	1.00[AFR][1000 genomes]
rs62155349	1.00[AFR][1000 genomes]
rs62155351	1.00[AFR][1000 genomes]
rs62155352	1.00[AFR][1000 genomes]
rs62155353	1.00[AFR][1000 genomes]
rs62155356	1.00[AFR][1000 genomes]
rs62155357	1.00[AFR][1000 genomes]
rs62155359	1.00[AFR][1000 genomes]
rs62156260	1.00[AFR][1000 genomes]
rs62156262	1.00[AFR][1000 genomes]
rs62156275	1.00[AFR][1000 genomes]
rs62156684	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62156685	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62156687	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62156709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156725	1.00[AFR][1000 genomes]
rs62156726	1.00[AFR][1000 genomes]
rs62156727	1.00[AFR][1000 genomes]
rs62156728	1.00[AFR][1000 genomes]
rs62156729	1.00[AFR][1000 genomes]
rs62156730	1.00[AFR][1000 genomes]
rs62156731	1.00[AFR][1000 genomes]
rs62156732	1.00[AFR][1000 genomes]
rs62156733	1.00[AFR][1000 genomes]
rs62156738	1.00[AFR][1000 genomes]
rs62156739	1.00[AFR][1000 genomes]
rs62156741	1.00[AFR][1000 genomes]
rs62156742	1.00[AFR][1000 genomes]
rs62156743	1.00[AFR][1000 genomes]
rs62157893	1.00[AFR][1000 genomes]
rs62157895	1.00[AFR][1000 genomes]
rs62157896	1.00[AFR][1000 genomes]
rs62157897	1.00[AFR][1000 genomes]
rs62157898	1.00[AFR][1000 genomes]
rs62157899	1.00[AFR][1000 genomes]
rs62157900	1.00[AFR][1000 genomes]
rs62157902	1.00[AFR][1000 genomes]
rs62157903	1.00[AFR][1000 genomes]
rs62157904	1.00[AFR][1000 genomes]
rs62157905	1.00[AFR][1000 genomes]
rs62157906	1.00[AFR][1000 genomes]
rs62157909	1.00[AFR][1000 genomes]
rs62157910	1.00[AFR][1000 genomes]
rs62157912	1.00[AFR][1000 genomes]
rs62157913	1.00[AFR][1000 genomes]
rs62157917	1.00[AFR][1000 genomes]
rs62157918	1.00[AFR][1000 genomes]
rs62157919	1.00[AFR][1000 genomes]
rs62157920	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1004082	chr2:98792256-98967681	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv535833	chr2:98792256-98967681	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv582513	chr2:98829237-98869914	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv582514	chr2:98835962-98869914	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1014147	chr2:98855007-98878044	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv818075	chr2:98855497-98872039	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv582515	chr2:98855497-98885925	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv517669	chr2:98855497-98889961	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv437289	chr2:98855497-98891519	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3459702	chr2:98856083-98886708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3459703	chr2:98856205-98886602	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv19987	chr2:98856422-98886491	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1010376	chr2:98858308-98878044	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv1008771	chr2:98858308-98881340	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv2760564	chr2:98858308-98881352	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv1012433	chr2:98858308-98888391	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv1012121	chr2:98858308-98889961	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98857400-98859400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:98857400-98859400	Enhancers	Brain Germinal Matrix	brain
3	chr2:98857400-98859600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:98859200-98859400	Enhancers	Brain Angular Gyrus	brain
5	chr2:98859200-98859400	Enhancers	Brain Cingulate Gyrus	brain
6	chr2:98859200-98859400	Enhancers	Brain Hippocampus Middle	brain
7	chr2:98859200-98859400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr2:98859200-98859400	Enhancers	Brain Substantia Nigra	brain

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