Variant report

Variant	rs62166482
Chromosome Location	chr2:142338692-142338693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55677762	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56394617	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58536842	1.00[EUR][1000 genomes]
rs62166483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62166493	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62166495	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62166496	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62166497	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62167895	1.00[AFR][1000 genomes]
rs62167897	1.00[AFR][1000 genomes]
rs62167937	0.82[ASN][1000 genomes]
rs62167940	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62167941	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62169788	1.00[EUR][1000 genomes]
rs62169789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62169793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62169797	1.00[EUR][1000 genomes]
rs62169798	1.00[EUR][1000 genomes]
rs62169799	1.00[EUR][1000 genomes]
rs62169800	1.00[EUR][1000 genomes]
rs62169803	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62169806	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv459640	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv583213	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv1800912	chr2:142324505-142339047	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv583233	chr2:142336104-142359850	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv875244	chr2:142336104-142421500	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	nsv875245	chr2:142336104-142421500	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142338200-142339600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr2:142338400-142338800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:142338400-142339000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:142338400-142339000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:142338400-142340000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:142338400-142340000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:142338600-142339400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:142338600-142340000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:142338600-142340000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr2:142338600-142340000	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links