Variant report

Variant	rs62167941
Chromosome Location	chr2:142292724-142292725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142291504..142294290-chr2:142295014..142296558,2	MCF-7	breast:
2	chr2:142288498..142290059-chr2:142292199..142295076,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55677762	0.88[EUR][1000 genomes]
rs56394617	0.88[EUR][1000 genomes]
rs58536842	0.88[EUR][1000 genomes]
rs62166482	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62166483	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62167937	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62167940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62169788	0.88[EUR][1000 genomes]
rs62169789	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62169793	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62169797	0.88[EUR][1000 genomes]
rs62169798	0.88[EUR][1000 genomes]
rs62169799	0.88[EUR][1000 genomes]
rs62169800	0.88[EUR][1000 genomes]
rs62169803	0.88[EUR][1000 genomes]
rs62169806	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv470491	chr2:142254119-142299923	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	nsv583210	chr2:142259592-142295042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv459629	chr2:142263400-142295042	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv583211	chr2:142263400-142295042	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv583212	chr2:142263979-142309330	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	nsv459640	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv583213	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142291200-142293200	Enhancers	Primary hematopoietic stem cells	blood
2	chr2:142291200-142293400	Enhancers	Primary B cells from peripheral blood	blood
3	chr2:142291200-142293400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr2:142291600-142293200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:142291600-142293400	Enhancers	Primary T cells from cord blood	blood
6	chr2:142291600-142293400	Enhancers	Brain Hippocampus Middle	brain
7	chr2:142291800-142293000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:142291800-142293400	Enhancers	Dnd41	blood
9	chr2:142292000-142292800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr2:142292000-142292800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:142292000-142293000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:142292000-142293000	Flanking Active TSS	GM12878-XiMat	blood
13	chr2:142292000-142293400	Enhancers	Brain Angular Gyrus	brain
14	chr2:142292200-142292800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:142292200-142292800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:142292200-142292800	Enhancers	Fetal Brain Female	brain
17	chr2:142292200-142292800	Enhancers	Fetal Heart	heart
18	chr2:142292200-142292800	Enhancers	Fetal Stomach	stomach
19	chr2:142292200-142293000	Enhancers	Brain Cingulate Gyrus	brain
20	chr2:142292400-142292800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:142292400-142292800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr2:142292400-142292800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
23	chr2:142292400-142292800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr2:142292400-142292800	Active TSS	Monocytes-CD14+_RO01746	blood
25	chr2:142292400-142293000	Enhancers	Colon Smooth Muscle	Colon
26	chr2:142292600-142292800	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr2:142292600-142292800	Flanking Active TSS	Brain Substantia Nigra	brain
28	chr2:142292600-142293000	Flanking Active TSS	Brain Anterior Caudate	brain
29	chr2:142292600-142293000	Enhancers	Fetal Thymus	thymus

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