Variant report
| Variant | rs62166527 |
|---|---|
| Chromosome Location | chr2:123859364-123859365 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1154994 | 0.85[AFR][1000 genomes] |
| rs1154996 | 0.85[AFR][1000 genomes] |
| rs1154997 | 0.85[AFR][1000 genomes] |
| rs1160012 | 0.85[AFR][1000 genomes] |
| rs11903864 | 0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12466984 | 0.85[AFR][1000 genomes] |
| rs12476143 | 0.85[AFR][1000 genomes] |
| rs12478792 | 0.85[AFR][1000 genomes] |
| rs12478793 | 0.85[AFR][1000 genomes] |
| rs12996298 | 0.85[AFR][1000 genomes] |
| rs17381599 | 0.85[AFR][1000 genomes] |
| rs17466105 | 0.85[AFR][1000 genomes] |
| rs2063800 | 0.85[AFR][1000 genomes] |
| rs62166501 | 0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6726973 | 0.85[AFR][1000 genomes] |
| rs6731851 | 0.85[AFR][1000 genomes] |
| rs6734712 | 0.85[AFR][1000 genomes] |
| rs6754344 | 0.85[AFR][1000 genomes] |
| rs6755603 | 0.85[AFR][1000 genomes] |
| rs6755929 | 0.85[AFR][1000 genomes] |
| rs6761730 | 0.85[AFR][1000 genomes] |
| rs7557675 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7578225 | 0.81[AFR][1000 genomes] |
| rs7608420 | 0.84[AFR][1000 genomes] |
| rs7608426 | 0.84[AFR][1000 genomes] |
| rs7608772 | 0.83[AFR][1000 genomes] |
| rs7609057 | 0.85[AFR][1000 genomes] |
| rs957759 | 0.85[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv492280 | chr2:123447662-123973577 | Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | esv2760647 | chr2:123678437-124619697 | Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv1010200 | chr2:123816326-123887210 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:123856800-123861400 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr2:123857400-123861400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
