Variant report

Variant	rs6761730
Chromosome Location	chr2:123843249-123843250
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10178398	0.89[ASN][1000 genomes]
rs1154994	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1154995	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1154996	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1154997	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1160011	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1160012	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11903864	0.87[AFR][1000 genomes]
rs12466984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12476143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12478792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12478793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12620936	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12996298	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13031371	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1395931	0.89[ASN][1000 genomes]
rs1606802	0.89[ASN][1000 genomes]
rs17381599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17466105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2063800	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2248895	0.94[ASN][1000 genomes]
rs2419071	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2458994	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2661001	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2661032	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2661035	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2661036	0.91[ASN][1000 genomes]
rs2661041	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2661043	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2661044	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2661045	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2673187	0.93[ASN][1000 genomes]
rs2673188	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2673189	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2673194	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2673196	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2900804	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs299536	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs299546	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs299548	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs299549	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs299550	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs299551	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs299553	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs299560	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs299561	0.93[ASN][1000 genomes]
rs4848824	0.89[ASN][1000 genomes]
rs62166501	0.87[AFR][1000 genomes]
rs62166527	0.85[AFR][1000 genomes]
rs6726973	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6731851	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6734712	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6754344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6755603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6755929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7608420	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7608426	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7608772	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7609057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs957759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9636359	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492280	chr2:123447662-123973577	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2760647	chr2:123678437-124619697	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1010200	chr2:123816326-123887210	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524501	chr2:123840759-123849482	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:123839400-123844200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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