Variant report

Variant	rs62169054
Chromosome Location	chr2:172124048-172124049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12613399	0.93[ASN][1000 genomes]
rs1477181	0.83[ASN][1000 genomes]
rs17218110	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17283817	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1861769	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1861770	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2193455	0.95[ASN][1000 genomes]
rs4667682	0.92[AMR][1000 genomes]
rs6747959	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs72625231	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7566096	0.96[ASN][1000 genomes]
rs9653290	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172102800-172127400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:172118600-172124800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:172118800-172127600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:172119000-172124200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:172119000-172124400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:172119000-172124400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:172119000-172128200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr2:172119200-172124200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:172119200-172124400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr2:172119600-172127600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr2:172123400-172124600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:172123600-172125200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:172124000-172125200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:172124000-172125400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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