Variant report

Variant	rs9653290
Chromosome Location	chr2:172098978-172098979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12613399	0.97[ASN][1000 genomes]
rs1477181	0.85[ASN][1000 genomes]
rs17218110	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17283817	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1861769	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1861770	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2193455	0.96[ASN][1000 genomes]
rs4667682	0.92[AMR][1000 genomes]
rs62169054	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6747959	0.83[AMR][1000 genomes]
rs72625231	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7566096	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172094200-172100800	Weak transcription	Placenta	Placenta
2	chr2:172095800-172100600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:172095800-172100800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:172096000-172104000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr2:172096800-172100800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:172098200-172099000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:172098800-172101000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:172098800-172101600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links