Variant report

Variant	rs62174360
Chromosome Location	chr2:174088215-174088216
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:174082835..174085269-chr2:174086246..174090013,3	K562	blood:
2	chr2:174085833..174088569-chr2:174220381..174221927,2	K562	blood:
3	chr2:174088206..174090111-chr2:174093150..174095218,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236391	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs62175814	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:174048600-174095200	Weak transcription	Thymus	Thymus
2	chr2:174053400-174089800	Weak transcription	Pancreas	Pancrea
3	chr2:174058000-174112800	Weak transcription	Spleen	Spleen
4	chr2:174060200-174092600	Weak transcription	Aorta	Aorta
5	chr2:174061200-174097600	Weak transcription	Lung	lung
6	chr2:174061400-174092200	Weak transcription	Brain Substantia Nigra	brain
7	chr2:174063600-174097600	Weak transcription	HSMM	muscle
8	chr2:174063800-174095000	Weak transcription	Right Ventricle	heart
9	chr2:174064200-174097600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:174069400-174097000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr2:174069400-174097600	Weak transcription	Primary B cells from cord blood	blood
12	chr2:174069600-174096600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:174071800-174094200	Weak transcription	Fetal Thymus	thymus
14	chr2:174072200-174095400	Weak transcription	Right Atrium	heart
15	chr2:174075400-174097600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr2:174077000-174091800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr2:174077400-174096400	Weak transcription	Hela-S3	cervix
18	chr2:174078800-174091200	Weak transcription	Liver	Liver
19	chr2:174078800-174097800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:174082200-174088400	Weak transcription	Psoas Muscle	Psoas
21	chr2:174082200-174088800	Weak transcription	NHEK	skin
22	chr2:174082200-174095800	Weak transcription	Fetal Stomach	stomach
23	chr2:174082200-174097400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr2:174082800-174092200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr2:174083200-174092200	Weak transcription	NH-A	brain
26	chr2:174083400-174100600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr2:174083400-174136400	Weak transcription	Esophagus	oesophagus
28	chr2:174083600-174089800	Weak transcription	Fetal Intestine Small	intestine
29	chr2:174083600-174103400	Weak transcription	NHLF	lung
30	chr2:174083800-174089800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr2:174083800-174090600	Weak transcription	Fetal Intestine Large	intestine
32	chr2:174083800-174091200	Weak transcription	Fetal Kidney	kidney
33	chr2:174083800-174092400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr2:174083800-174095000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr2:174083800-174097600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr2:174083800-174097600	Weak transcription	NHDF-Ad	bronchial
37	chr2:174083800-174119200	Weak transcription	HMEC	breast
38	chr2:174084000-174091200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr2:174084000-174091200	Weak transcription	HepG2	liver
40	chr2:174084000-174095200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr2:174084000-174095800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr2:174084000-174095800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr2:174084200-174091800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr2:174084400-174094200	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr2:174084600-174097600	Weak transcription	Primary hematopoietic stem cells	blood
46	chr2:174085400-174088400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr2:174086200-174089600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr2:174086200-174091200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr2:174086200-174095000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr2:174086200-174101600	Weak transcription	Ovary	ovary

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