Variant report

Variant	rs62175814
Chromosome Location	chr2:174019940-174019941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:174011042..174014620-chr2:174016771..174020819,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs62174360	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62175777	1.00[AFR][1000 genomes]
rs62175803	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs62175804	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv834461	chr2:173979734-174038471	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:174007800-174021000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:174007800-174021000	Weak transcription	Fetal Intestine Small	intestine
3	chr2:174008600-174020800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr2:174012800-174020000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr2:174012800-174026600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr2:174013400-174025400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr2:174013600-174024600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:174014600-174021000	Weak transcription	Ovary	ovary
9	chr2:174015400-174027400	Weak transcription	Fetal Muscle Leg	muscle
10	chr2:174015400-174047000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr2:174016200-174048800	Weak transcription	K562	blood
12	chr2:174016400-174028200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:174016800-174020600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:174017000-174022400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr2:174017000-174022600	Weak transcription	Colon Smooth Muscle	Colon
16	chr2:174017200-174023800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr2:174017200-174024000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:174017200-174024200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:174018000-174021800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr2:174018000-174024200	Weak transcription	Fetal Heart	heart
21	chr2:174018000-174025400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:174018400-174020000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:174018400-174020200	Weak transcription	HMEC	breast
24	chr2:174018400-174020800	Weak transcription	A549	lung
25	chr2:174018400-174022400	Weak transcription	Hela-S3	cervix
26	chr2:174018400-174022600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr2:174018400-174024000	Weak transcription	Osteobl	bone
28	chr2:174018400-174024200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr2:174018600-174022200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:174018600-174022400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr2:174018600-174022400	Weak transcription	NHDF-Ad	bronchial
32	chr2:174018600-174023800	Weak transcription	NHLF	lung
33	chr2:174018600-174024200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr2:174018800-174020600	Weak transcription	NHEK	skin
35	chr2:174019000-174020200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr2:174019000-174021000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr2:174019000-174021200	Weak transcription	Left Ventricle	heart
38	chr2:174019000-174021200	Weak transcription	Psoas Muscle	Psoas
39	chr2:174019400-174021200	Weak transcription	Right Ventricle	heart
40	chr2:174019800-174021800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links