Variant report

Variant	rs62175803
Chromosome Location	chr2:173967959-173967960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173965020..173969595-chr2:173970768..173975249,5	K562	blood:
2	chr2:173957329..173958875-chr2:173966964..173968819,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62175777	1.00[AFR][1000 genomes]
rs62175804	1.00[EUR][1000 genomes]
rs62175814	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173941600-173969600	Weak transcription	Spleen	Spleen
2	chr2:173942800-173971400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:173943000-173971200	Weak transcription	HSMMtube	muscle
4	chr2:173943400-173974200	Weak transcription	Fetal Intestine Large	intestine
5	chr2:173945400-173991200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:173952000-173973400	Weak transcription	Hela-S3	cervix
7	chr2:173952200-173971400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:173953000-173968000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:173953800-173991400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr2:173955400-173970200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr2:173955600-173968600	Weak transcription	Placenta	Placenta
12	chr2:173955600-173971800	Weak transcription	Lung	lung
13	chr2:173955600-173972000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:173955600-173984000	Weak transcription	Gastric	stomach
15	chr2:173955800-173977200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr2:173956200-173969000	Weak transcription	NH-A	brain
17	chr2:173956600-173971600	Weak transcription	Fetal Thymus	thymus
18	chr2:173957000-173974400	Weak transcription	Fetal Stomach	stomach
19	chr2:173957600-173972000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr2:173957800-173973400	Weak transcription	Fetal Lung	lung
21	chr2:173957800-173983800	Weak transcription	Fetal Muscle Leg	muscle
22	chr2:173958000-173983800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr2:173958200-173973800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:173958200-173974000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:173959800-173974200	Weak transcription	HepG2	liver
26	chr2:173961400-173973400	Weak transcription	Fetal Intestine Small	intestine
27	chr2:173961800-173970800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr2:173961800-173974400	Weak transcription	NHLF	lung
29	chr2:173962000-173971000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr2:173962200-173983800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:173964400-173968000	Weak transcription	Primary T cells from cord blood	blood
32	chr2:173964600-173968400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr2:173964600-173971200	Weak transcription	HSMM	muscle
34	chr2:173964600-173971600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr2:173965000-173974000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr2:173965000-173987400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr2:173965200-173969400	Weak transcription	Left Ventricle	heart
38	chr2:173965200-173969600	Weak transcription	Right Atrium	heart
39	chr2:173965400-173969600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr2:173965400-173971400	Weak transcription	HMEC	breast
41	chr2:173965400-173984400	Weak transcription	Aorta	Aorta
42	chr2:173965400-173987200	Weak transcription	Dnd41	blood
43	chr2:173965400-173989200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr2:173965600-173970200	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr2:173965600-173971000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr2:173965600-173973800	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr2:173965600-173983800	Weak transcription	Adipose Nuclei	Adipose
48	chr2:173965800-173970400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr2:173966400-173968000	Strong transcription	K562	blood
50	chr2:173966600-173968800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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