Variant report

Variant	rs62176786
Chromosome Location	chr2:169748955-169748956
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10497345	0.97[EUR][1000 genomes]
rs10497348	1.00[EUR][1000 genomes]
rs34073293	1.00[EUR][1000 genomes]
rs58191289	1.00[EUR][1000 genomes]
rs59686285	0.97[EUR][1000 genomes]
rs62175726	0.97[EUR][1000 genomes]
rs62176769	1.00[EUR][1000 genomes]
rs62176770	1.00[EUR][1000 genomes]
rs62176780	0.95[EUR][1000 genomes]
rs62176781	0.97[EUR][1000 genomes]
rs62176783	1.00[EUR][1000 genomes]
rs6739749	1.00[EUR][1000 genomes]
rs6739984	1.00[EUR][1000 genomes]
rs73014610	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583599	chr2:169664227-169903096	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv875381	chr2:169686559-169749841	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169747000-169757600	Weak transcription	Pancreas	Pancrea
2	chr2:169747400-169751000	Weak transcription	Liver	Liver
3	chr2:169747600-169751600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:169747600-169753200	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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