Variant report

Variant	rs62183544
Chromosome Location	chr2:172366810-172366811
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs3731979	1.00[ASN][1000 genomes]
rs3795997	1.00[ASN][1000 genomes]
rs56392714	0.87[ASN][1000 genomes]
rs57136707	0.87[ASN][1000 genomes]
rs59827170	1.00[ASN][1000 genomes]
rs62183542	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62183543	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6729749	0.87[ASN][1000 genomes]
rs6730160	0.87[ASN][1000 genomes]
rs73976160	0.87[ASN][1000 genomes]
rs73976165	0.87[ASN][1000 genomes]
rs73976170	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832950	chr2:172283513-172488111	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172340000-172368400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:172364000-172367000	Enhancers	Duodenum Mucosa	Duodenum
3	chr2:172364200-172368000	Weak transcription	Aorta	Aorta
4	chr2:172365600-172367000	Enhancers	Small Intestine	intestine
5	chr2:172366200-172367200	Enhancers	K562	blood
6	chr2:172366400-172367200	Flanking Active TSS	GM12878-XiMat	blood
7	chr2:172366600-172367000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:172366600-172367000	Enhancers	Colonic Mucosa	Colon
9	chr2:172366600-172367000	Enhancers	Esophagus	oesophagus
10	chr2:172366800-172367000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:172366800-172367000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr2:172366800-172367000	Flanking Active TSS	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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