Variant report

Variant	rs59827170
Chromosome Location	chr2:172341453-172341454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172332790..172336030-chr2:172339156..172342028,3	K562	blood:
2	chr2:172339539..172341953-chr2:172348003..172351874,3	K562	blood:
3	chr2:172340109..172342065-chr2:172370654..172373620,2	K562	blood:

Variant related genes	Relation type
ENSG00000234061	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16823212	1.00[EUR][1000 genomes]
rs2674496	1.00[EUR][1000 genomes]
rs28453686	0.83[AFR][1000 genomes]
rs3731979	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3795997	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56392714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57136707	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57580465	1.00[EUR][1000 genomes]
rs59195571	0.97[AFR][1000 genomes]
rs60018506	1.00[EUR][1000 genomes]
rs62183544	1.00[ASN][1000 genomes]
rs6729749	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6730160	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73976160	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73976164	0.85[AFR][1000 genomes]
rs73976165	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73976167	0.85[AFR][1000 genomes]
rs73976168	0.97[AFR][1000 genomes]
rs73976170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7560091	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv1832950	chr2:172283513-172488111	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172292000-172341600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:172306000-172348000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:172309600-172348400	Weak transcription	Fetal Heart	heart
4	chr2:172327000-172346800	Weak transcription	Colonic Mucosa	Colon
5	chr2:172327200-172341600	Weak transcription	Brain Germinal Matrix	brain
6	chr2:172327200-172344000	Weak transcription	Gastric	stomach
7	chr2:172327200-172346600	Weak transcription	Thymus	Thymus
8	chr2:172327200-172348800	Weak transcription	Spleen	Spleen
9	chr2:172327400-172343400	Weak transcription	A549	lung
10	chr2:172327400-172346800	Weak transcription	Hela-S3	cervix
11	chr2:172327400-172347600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr2:172327600-172344800	Weak transcription	Brain Anterior Caudate	brain
13	chr2:172327800-172346000	Weak transcription	Fetal Brain Male	brain
14	chr2:172330400-172346200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr2:172331400-172345800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr2:172331800-172343400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:172332200-172342800	Weak transcription	Colon Smooth Muscle	Colon
18	chr2:172332200-172344000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:172332800-172343600	Weak transcription	Fetal Kidney	kidney
20	chr2:172333400-172345400	Weak transcription	NHDF-Ad	bronchial
21	chr2:172333400-172347800	Weak transcription	Brain Angular Gyrus	brain
22	chr2:172334600-172349200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:172334800-172345000	Weak transcription	Fetal Intestine Small	intestine
24	chr2:172334800-172345200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr2:172334800-172346200	Weak transcription	Psoas Muscle	Psoas
26	chr2:172334800-172346800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:172334800-172347200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr2:172334800-172349200	Weak transcription	Esophagus	oesophagus
29	chr2:172335000-172345000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr2:172335200-172346400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr2:172335400-172349000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr2:172335600-172344600	Weak transcription	Osteobl	bone
33	chr2:172336800-172342200	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr2:172337000-172342000	Weak transcription	NH-A	brain
35	chr2:172337200-172344200	Weak transcription	Liver	Liver
36	chr2:172337600-172344800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr2:172337800-172344200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr2:172337800-172348000	Weak transcription	Brain Substantia Nigra	brain
39	chr2:172338000-172343400	Weak transcription	Fetal Lung	lung
40	chr2:172338000-172345000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr2:172338000-172345600	Weak transcription	Fetal Thymus	thymus
42	chr2:172338000-172349400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr2:172338200-172347000	Weak transcription	HMEC	breast
44	chr2:172338400-172349800	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr2:172338600-172345400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr2:172339000-172342800	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr2:172339000-172344800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr2:172339200-172341600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr2:172339600-172345400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr2:172339600-172347800	Weak transcription	H9 Cell Line	embryonic stem cell

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