Variant report

Variant	rs16823212
Chromosome Location	chr2:172391170-172391171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172383853..172385465-chr2:172390991..172392664,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10490603	1.00[CHB][hapmap]
rs16859370	1.00[CHB][hapmap]
rs17219416	1.00[CHB][hapmap]
rs2017090	1.00[CHB][hapmap]
rs2674496	1.00[EUR][1000 genomes]
rs3731979	1.00[EUR][1000 genomes]
rs3795997	1.00[EUR][1000 genomes]
rs56392714	1.00[EUR][1000 genomes]
rs57136707	1.00[EUR][1000 genomes]
rs57580465	1.00[EUR][1000 genomes]
rs59827170	1.00[EUR][1000 genomes]
rs60018506	1.00[EUR][1000 genomes]
rs6729749	1.00[EUR][1000 genomes]
rs6730160	1.00[EUR][1000 genomes]
rs73976160	1.00[EUR][1000 genomes]
rs73976165	1.00[EUR][1000 genomes]
rs73976170	1.00[EUR][1000 genomes]
rs7560091	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832950	chr2:172283513-172488111	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172381000-172394800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:172381000-172397800	Weak transcription	Gastric	stomach
3	chr2:172381000-172397800	Weak transcription	Left Ventricle	heart
4	chr2:172381000-172410400	Weak transcription	Fetal Thymus	thymus
5	chr2:172381200-172404400	Weak transcription	Right Atrium	heart
6	chr2:172381200-172407200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:172381200-172410400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:172381400-172397600	Weak transcription	Brain Anterior Caudate	brain
9	chr2:172381400-172405400	Weak transcription	Fetal Heart	heart
10	chr2:172382000-172397800	Weak transcription	Fetal Stomach	stomach
11	chr2:172382000-172399000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:172382400-172397800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr2:172386400-172397800	Weak transcription	Aorta	Aorta
14	chr2:172386400-172419800	Weak transcription	Lung	lung
15	chr2:172386600-172391200	Weak transcription	Fetal Kidney	kidney
16	chr2:172386600-172397600	Weak transcription	Fetal Lung	lung
17	chr2:172386600-172397800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr2:172386800-172397600	Weak transcription	Fetal Muscle Leg	muscle
19	chr2:172386800-172400600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr2:172387200-172397800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:172387200-172413800	Weak transcription	Spleen	Spleen
22	chr2:172387400-172398000	Weak transcription	NHEK	skin
23	chr2:172387800-172397800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr2:172388000-172411400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr2:172388200-172392000	Weak transcription	K562	blood
26	chr2:172388200-172411000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr2:172388400-172411800	Weak transcription	Brain Substantia Nigra	brain
28	chr2:172388600-172397800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr2:172388600-172412400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr2:172388800-172397600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr2:172388800-172397800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr2:172388800-172397800	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr2:172388800-172398000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr2:172388800-172398600	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr2:172388800-172399200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr2:172388800-172403200	Weak transcription	Small Intestine	intestine
37	chr2:172388800-172407400	Weak transcription	HSMM	muscle
38	chr2:172388800-172410400	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr2:172388800-172411000	Weak transcription	Brain Hippocampus Middle	brain
40	chr2:172388800-172413800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr2:172388800-172413800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr2:172388800-172414800	Weak transcription	Brain Angular Gyrus	brain
43	chr2:172388800-172414800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr2:172389000-172393400	Weak transcription	Adipose Nuclei	Adipose
45	chr2:172389000-172393400	Weak transcription	NHLF	lung
46	chr2:172389000-172397800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr2:172389000-172397800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr2:172389000-172398000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr2:172389000-172404000	Weak transcription	NH-A	brain
50	chr2:172389000-172411000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links