Variant report
| Variant | rs2674496 |
|---|---|
| Chromosome Location | chr2:172423513-172423514 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000115806 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs16823212 | 1.00[EUR][1000 genomes] |
| rs16859549 | 1.00[ASN][1000 genomes] |
| rs3731979 | 1.00[EUR][1000 genomes] |
| rs3795997 | 1.00[EUR][1000 genomes] |
| rs56392714 | 1.00[EUR][1000 genomes] |
| rs57136707 | 1.00[EUR][1000 genomes] |
| rs57580465 | 1.00[EUR][1000 genomes] |
| rs59827170 | 1.00[EUR][1000 genomes] |
| rs60018506 | 1.00[EUR][1000 genomes] |
| rs6729749 | 1.00[EUR][1000 genomes] |
| rs6730160 | 1.00[EUR][1000 genomes] |
| rs73976160 | 1.00[EUR][1000 genomes] |
| rs73976165 | 1.00[EUR][1000 genomes] |
| rs73976170 | 1.00[EUR][1000 genomes] |
| rs7560091 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1832950 | chr2:172283513-172488111 | Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
