Variant report

Variant	rs62203782
Chromosome Location	chr20:41194385-41194386
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:41189320..41191294-chr20:41193549..41196029,2	MCF-7	breast:

Extended variants
information (count: 160 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs16987003	1.00[EUR][1000 genomes]
rs2867442	0.82[EUR][1000 genomes]
rs41279250	1.00[EUR][1000 genomes]
rs41279252	1.00[EUR][1000 genomes]
rs41279254	1.00[EUR][1000 genomes]
rs41279258	0.82[EUR][1000 genomes]
rs41279260	1.00[EUR][1000 genomes]
rs59691798	1.00[EUR][1000 genomes]
rs6093653	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61472005	1.00[EUR][1000 genomes]
rs62203509	0.82[EUR][1000 genomes]
rs62203510	0.82[EUR][1000 genomes]
rs62203511	0.82[EUR][1000 genomes]
rs62203512	0.82[EUR][1000 genomes]
rs62203538	0.82[EUR][1000 genomes]
rs62203539	0.82[EUR][1000 genomes]
rs62203540	0.82[EUR][1000 genomes]
rs62203541	0.82[EUR][1000 genomes]
rs62203542	0.82[EUR][1000 genomes]
rs62203543	0.82[EUR][1000 genomes]
rs62203545	0.82[EUR][1000 genomes]
rs62203546	0.82[EUR][1000 genomes]
rs62203547	0.82[EUR][1000 genomes]
rs62203548	0.82[EUR][1000 genomes]
rs62203549	0.82[EUR][1000 genomes]
rs62203550	0.82[EUR][1000 genomes]
rs62203551	0.82[EUR][1000 genomes]
rs62203552	0.82[EUR][1000 genomes]
rs62203553	1.00[EUR][1000 genomes]
rs62203554	1.00[EUR][1000 genomes]
rs62203555	0.90[EUR][1000 genomes]
rs62203556	1.00[EUR][1000 genomes]
rs62203557	1.00[EUR][1000 genomes]
rs62203558	1.00[EUR][1000 genomes]
rs62203559	1.00[EUR][1000 genomes]
rs62203775	1.00[EUR][1000 genomes]
rs62203777	1.00[EUR][1000 genomes]
rs62203778	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203779	1.00[EUR][1000 genomes]
rs62203780	1.00[EUR][1000 genomes]
rs62203781	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203783	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203784	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203785	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203788	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62203789	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62203793	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62203794	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62204860	1.00[EUR][1000 genomes]
rs62204861	1.00[EUR][1000 genomes]
rs62204862	1.00[EUR][1000 genomes]
rs62204863	1.00[EUR][1000 genomes]
rs62204864	1.00[EUR][1000 genomes]
rs62204865	1.00[EUR][1000 genomes]
rs62204866	1.00[EUR][1000 genomes]
rs62204867	1.00[EUR][1000 genomes]
rs62204868	1.00[EUR][1000 genomes]
rs62204869	1.00[EUR][1000 genomes]
rs62204870	1.00[EUR][1000 genomes]
rs62204871	1.00[EUR][1000 genomes]
rs62204872	1.00[EUR][1000 genomes]
rs62204873	1.00[EUR][1000 genomes]
rs62204874	1.00[EUR][1000 genomes]
rs62204875	1.00[EUR][1000 genomes]
rs62204876	1.00[EUR][1000 genomes]
rs62204877	1.00[EUR][1000 genomes]
rs62204878	1.00[EUR][1000 genomes]
rs62204879	1.00[EUR][1000 genomes]
rs62204880	1.00[EUR][1000 genomes]
rs62204881	1.00[EUR][1000 genomes]
rs62204902	1.00[EUR][1000 genomes]
rs62204903	1.00[EUR][1000 genomes]
rs62204904	1.00[EUR][1000 genomes]
rs62204905	1.00[EUR][1000 genomes]
rs62204906	1.00[EUR][1000 genomes]
rs62204907	1.00[EUR][1000 genomes]
rs62204908	1.00[EUR][1000 genomes]
rs62204909	1.00[EUR][1000 genomes]
rs62204910	1.00[EUR][1000 genomes]
rs62204911	1.00[EUR][1000 genomes]
rs62204912	1.00[EUR][1000 genomes]
rs62204914	1.00[EUR][1000 genomes]
rs62204915	1.00[EUR][1000 genomes]
rs62204916	1.00[EUR][1000 genomes]
rs62204917	1.00[EUR][1000 genomes]
rs62204918	1.00[EUR][1000 genomes]
rs62204919	1.00[EUR][1000 genomes]
rs62204920	1.00[EUR][1000 genomes]
rs62204921	1.00[EUR][1000 genomes]
rs62204922	1.00[EUR][1000 genomes]
rs62204923	1.00[EUR][1000 genomes]
rs62204924	1.00[EUR][1000 genomes]
rs62204925	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204926	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204927	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204928	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204929	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204930	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204931	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204932	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204933	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204934	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204935	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204936	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204937	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204938	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204939	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204940	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204941	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204942	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204944	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204945	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204946	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204947	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204950	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62204951	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62205768	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62205769	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62205785	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62205786	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62205788	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62205789	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs764445	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1059852	chr20:41087948-41217672	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv544276	chr20:41087948-41217672	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1055546	chr20:41102999-41260749	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1064253	chr20:41120425-41379706	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1061449	chr20:41126720-41212178	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv586006	chr20:41157707-41290936	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1065892	chr20:41168686-41230732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1063513	chr20:41171076-41303205	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1056430	chr20:41171814-41243487	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv586008	chr20:41174105-41205020	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv586009	chr20:41174105-41254693	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv870259	chr20:41174537-41251308	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv458978	chr20:41174693-41230763	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv586010	chr20:41174693-41230763	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv586011	chr20:41174693-41243236	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv912875	chr20:41174693-41254183	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv519654	chr20:41174693-41254693	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv912876	chr20:41174693-41296994	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv432118	chr20:41175615-41243286	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv586012	chr20:41176364-41243236	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
22	nsv1061179	chr20:41178700-41243024	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv1057508	chr20:41178700-41243487	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
24	nsv586013	chr20:41178858-41243236	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
25	nsv586014	chr20:41178858-41252905	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
26	nsv432119	chr20:41178886-41243286	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
27	nsv915994	chr20:41180550-41464507	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
28	nsv1065411	chr20:41181079-41234914	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	nsv432120	chr20:41181486-41243186	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
30	nsv912877	chr20:41182311-41210746	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv586015	chr20:41182311-41240700	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
32	nsv586016	chr20:41182311-41243236	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
33	nsv586017	chr20:41182311-41261444	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
34	nsv526415	chr20:41184009-41290936	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
35	nsv1063974	chr20:41185138-41292788	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
36	nsv586018	chr20:41188318-41297693	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
37	nsv532517	chr20:41188651-41342196	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41185800-41197800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:41193800-41194600	Enhancers	Fetal Stomach	stomach
3	chr20:41194000-41194400	Enhancers	Fetal Muscle Leg	muscle

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