Variant report

Variant	rs2867442
Chromosome Location	chr20:41087589-41087590
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs16987003	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs41279250	0.82[EUR][1000 genomes]
rs41279252	0.82[EUR][1000 genomes]
rs41279254	0.82[EUR][1000 genomes]
rs41279260	0.82[EUR][1000 genomes]
rs59691798	0.82[EUR][1000 genomes]
rs6093653	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6102878	1.00[CEU][hapmap]
rs6102879	1.00[CEU][hapmap]
rs61472005	0.82[EUR][1000 genomes]
rs62203501	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62203506	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62203507	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62203509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203510	1.00[EUR][1000 genomes]
rs62203511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62203553	0.82[EUR][1000 genomes]
rs62203554	0.82[EUR][1000 genomes]
rs62203556	0.82[EUR][1000 genomes]
rs62203557	0.82[EUR][1000 genomes]
rs62203558	0.82[EUR][1000 genomes]
rs62203559	0.82[EUR][1000 genomes]
rs62203775	0.82[EUR][1000 genomes]
rs62203777	0.82[EUR][1000 genomes]
rs62203778	0.82[EUR][1000 genomes]
rs62203779	0.82[EUR][1000 genomes]
rs62203780	0.82[EUR][1000 genomes]
rs62203781	0.82[EUR][1000 genomes]
rs62203782	0.82[EUR][1000 genomes]
rs62203783	0.82[EUR][1000 genomes]
rs62203784	0.82[EUR][1000 genomes]
rs62203785	0.82[EUR][1000 genomes]
rs62204860	0.82[EUR][1000 genomes]
rs62204861	0.82[EUR][1000 genomes]
rs62204862	0.82[EUR][1000 genomes]
rs62204863	0.82[EUR][1000 genomes]
rs62204864	0.82[EUR][1000 genomes]
rs62204865	0.82[EUR][1000 genomes]
rs62204866	0.82[EUR][1000 genomes]
rs62204867	0.82[EUR][1000 genomes]
rs62204868	0.82[EUR][1000 genomes]
rs62204869	0.82[EUR][1000 genomes]
rs62204870	0.82[EUR][1000 genomes]
rs62204871	0.82[EUR][1000 genomes]
rs62204872	0.82[EUR][1000 genomes]
rs62204873	0.82[EUR][1000 genomes]
rs62204874	0.82[EUR][1000 genomes]
rs62204875	0.82[EUR][1000 genomes]
rs62204876	0.82[EUR][1000 genomes]
rs62204877	0.82[EUR][1000 genomes]
rs62204878	0.82[EUR][1000 genomes]
rs62204879	0.82[EUR][1000 genomes]
rs62204880	0.82[EUR][1000 genomes]
rs62204881	0.82[EUR][1000 genomes]
rs62204902	0.82[EUR][1000 genomes]
rs62204903	0.82[EUR][1000 genomes]
rs62204904	0.82[EUR][1000 genomes]
rs62204905	0.82[EUR][1000 genomes]
rs62204906	0.82[EUR][1000 genomes]
rs62204907	0.82[EUR][1000 genomes]
rs62204908	0.82[EUR][1000 genomes]
rs62204909	0.82[EUR][1000 genomes]
rs62204910	0.82[EUR][1000 genomes]
rs62204911	0.82[EUR][1000 genomes]
rs62204912	0.82[EUR][1000 genomes]
rs62204914	0.82[EUR][1000 genomes]
rs62204915	0.82[EUR][1000 genomes]
rs62204916	0.82[EUR][1000 genomes]
rs62204917	0.82[EUR][1000 genomes]
rs62204918	0.82[EUR][1000 genomes]
rs62204919	0.82[EUR][1000 genomes]
rs62204920	0.82[EUR][1000 genomes]
rs62204921	0.82[EUR][1000 genomes]
rs62204922	0.82[EUR][1000 genomes]
rs62204923	0.82[EUR][1000 genomes]
rs62204924	0.82[EUR][1000 genomes]
rs62204925	0.82[EUR][1000 genomes]
rs62204926	0.82[EUR][1000 genomes]
rs62204927	0.82[EUR][1000 genomes]
rs62204928	0.82[EUR][1000 genomes]
rs62204929	0.82[EUR][1000 genomes]
rs62204930	0.82[EUR][1000 genomes]
rs62204931	0.82[EUR][1000 genomes]
rs62204932	0.82[EUR][1000 genomes]
rs62204933	0.82[EUR][1000 genomes]
rs62204934	0.82[EUR][1000 genomes]
rs62204935	0.82[EUR][1000 genomes]
rs62204936	0.82[EUR][1000 genomes]
rs62204937	0.82[EUR][1000 genomes]
rs62204938	0.82[EUR][1000 genomes]
rs62204939	0.82[EUR][1000 genomes]
rs62204940	0.82[EUR][1000 genomes]
rs62204941	0.82[EUR][1000 genomes]
rs62204942	0.82[EUR][1000 genomes]
rs62204944	0.82[EUR][1000 genomes]
rs62204945	0.82[EUR][1000 genomes]
rs62204946	0.82[EUR][1000 genomes]
rs62204947	0.82[EUR][1000 genomes]
rs62204950	0.82[EUR][1000 genomes]
rs62204951	0.82[EUR][1000 genomes]
rs62205768	0.82[EUR][1000 genomes]
rs62205769	0.82[EUR][1000 genomes]
rs62205785	0.82[EUR][1000 genomes]
rs62205786	0.82[EUR][1000 genomes]
rs62205788	0.82[EUR][1000 genomes]
rs62205789	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41087200-41089200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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