Variant report

Variant	rs6102878
Chromosome Location	chr20:41138475-41138476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs16987003	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2867442	1.00[CEU][hapmap]
rs41279250	0.90[EUR][1000 genomes]
rs41279252	0.90[EUR][1000 genomes]
rs41279254	0.90[EUR][1000 genomes]
rs41279260	0.90[EUR][1000 genomes]
rs59691798	0.90[EUR][1000 genomes]
rs6093653	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6102879	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs61472005	0.90[EUR][1000 genomes]
rs62203553	0.90[EUR][1000 genomes]
rs62203554	0.90[EUR][1000 genomes]
rs62203555	0.81[EUR][1000 genomes]
rs62203556	0.90[EUR][1000 genomes]
rs62203557	0.90[EUR][1000 genomes]
rs62203558	0.90[EUR][1000 genomes]
rs62203559	0.90[EUR][1000 genomes]
rs62203775	0.90[EUR][1000 genomes]
rs62203777	0.90[EUR][1000 genomes]
rs62203778	0.90[EUR][1000 genomes]
rs62203779	0.90[EUR][1000 genomes]
rs62203780	0.90[EUR][1000 genomes]
rs62203781	0.90[EUR][1000 genomes]
rs62203782	0.90[EUR][1000 genomes]
rs62203783	0.90[EUR][1000 genomes]
rs62203784	0.90[EUR][1000 genomes]
rs62203785	0.90[EUR][1000 genomes]
rs62204860	0.90[EUR][1000 genomes]
rs62204861	0.90[EUR][1000 genomes]
rs62204862	0.90[EUR][1000 genomes]
rs62204863	0.90[EUR][1000 genomes]
rs62204864	0.90[EUR][1000 genomes]
rs62204865	0.90[EUR][1000 genomes]
rs62204866	0.90[EUR][1000 genomes]
rs62204867	0.90[EUR][1000 genomes]
rs62204868	0.90[EUR][1000 genomes]
rs62204869	0.90[EUR][1000 genomes]
rs62204870	0.90[EUR][1000 genomes]
rs62204871	0.90[EUR][1000 genomes]
rs62204872	0.90[EUR][1000 genomes]
rs62204873	0.90[EUR][1000 genomes]
rs62204874	0.90[EUR][1000 genomes]
rs62204875	0.90[EUR][1000 genomes]
rs62204876	0.90[EUR][1000 genomes]
rs62204877	0.90[EUR][1000 genomes]
rs62204878	0.90[EUR][1000 genomes]
rs62204879	0.90[EUR][1000 genomes]
rs62204880	0.90[EUR][1000 genomes]
rs62204881	0.90[EUR][1000 genomes]
rs62204902	0.90[EUR][1000 genomes]
rs62204903	0.90[EUR][1000 genomes]
rs62204904	0.90[EUR][1000 genomes]
rs62204905	0.90[EUR][1000 genomes]
rs62204906	0.90[EUR][1000 genomes]
rs62204907	0.90[EUR][1000 genomes]
rs62204908	0.90[EUR][1000 genomes]
rs62204909	0.90[EUR][1000 genomes]
rs62204910	0.90[EUR][1000 genomes]
rs62204911	0.90[EUR][1000 genomes]
rs62204912	0.90[EUR][1000 genomes]
rs62204914	0.90[EUR][1000 genomes]
rs62204915	0.90[EUR][1000 genomes]
rs62204916	0.90[EUR][1000 genomes]
rs62204917	0.90[EUR][1000 genomes]
rs62204918	0.90[EUR][1000 genomes]
rs62204919	0.90[EUR][1000 genomes]
rs62204920	0.90[EUR][1000 genomes]
rs62204921	0.90[EUR][1000 genomes]
rs62204922	0.90[EUR][1000 genomes]
rs62204923	0.90[EUR][1000 genomes]
rs62204924	0.90[EUR][1000 genomes]
rs62204925	0.90[EUR][1000 genomes]
rs62204926	0.90[EUR][1000 genomes]
rs62204927	0.90[EUR][1000 genomes]
rs62204928	0.90[EUR][1000 genomes]
rs62204929	0.90[EUR][1000 genomes]
rs62204930	0.90[EUR][1000 genomes]
rs62204931	0.90[EUR][1000 genomes]
rs62204932	0.90[EUR][1000 genomes]
rs62204933	0.90[EUR][1000 genomes]
rs62204934	0.90[EUR][1000 genomes]
rs62204935	0.90[EUR][1000 genomes]
rs62204936	0.90[EUR][1000 genomes]
rs62204937	0.90[EUR][1000 genomes]
rs62204938	0.90[EUR][1000 genomes]
rs62204939	0.90[EUR][1000 genomes]
rs62204940	0.90[EUR][1000 genomes]
rs62204941	0.90[EUR][1000 genomes]
rs62204942	0.90[EUR][1000 genomes]
rs62204944	0.90[EUR][1000 genomes]
rs62204945	0.90[EUR][1000 genomes]
rs62204946	0.90[EUR][1000 genomes]
rs62204947	0.90[EUR][1000 genomes]
rs62204950	0.90[EUR][1000 genomes]
rs62204951	0.90[EUR][1000 genomes]
rs62205768	0.90[EUR][1000 genomes]
rs62205769	0.90[EUR][1000 genomes]
rs62205785	0.90[EUR][1000 genomes]
rs62205786	0.90[EUR][1000 genomes]
rs62205788	0.90[EUR][1000 genomes]
rs62205789	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv1059852	chr20:41087948-41217672	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv544276	chr20:41087948-41217672	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1055546	chr20:41102999-41260749	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1807209	chr20:41107678-41154898	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1064253	chr20:41120425-41379706	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1061449	chr20:41126720-41212178	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv2762074	chr20:41131791-41140138	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3380676	chr20:41136863-41139011	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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