Variant report

Variant	rs62228549
Chromosome Location	chr3:25123390-25123391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13072262	0.84[AFR][1000 genomes]
rs13325558	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1603991	0.82[AFR][1000 genomes]
rs4858700	0.83[AFR][1000 genomes]
rs62228548	0.93[EUR][1000 genomes]
rs62230269	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6797206	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6801041	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7626290	0.89[ASN][1000 genomes]
rs9861541	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9864928	0.83[AFR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25117000-25127800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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