Variant report

Variant	rs4858700
Chromosome Location	chr3:25127689-25127690
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1104724	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12486699	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13072262	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13325558	0.84[AFR][1000 genomes]
rs1587427	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1587431	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1603988	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1603989	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1603990	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1603991	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1609491	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1609936	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1609938	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2012334	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4568087	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4858141	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4858142	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4858699	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4858701	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4858704	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62228549	0.83[AFR][1000 genomes]
rs6550947	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6776699	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6797206	0.87[AFR][1000 genomes]
rs7429279	0.84[ASN][1000 genomes]
rs7628200	1.00[EUR][1000 genomes]
rs7630907	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9820612	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9827724	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9864928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25117000-25127800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:25126400-25127800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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